Jatropha curcas (Barbados nut): 105649118
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Entry
105649118 CDS
T03922
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105649118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105649118
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105649118
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105649118
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105649118
NCBI-ProteinID:
XP_012091063
LinkDB
All DBs
Position
Unknown
AA seq
298 aa
AA seq
DB search
MFSAAAMNPIIPVWRYNFFDELKCIDSLLHFHRVVSVDTEFPGFLIDTPRHANEFLTYSN
LKNNVDATTLIQLGLTLSDENGNIAGCWEFNFSFDAQTEVCTDDALEFLKDHGIDFDKLK
NEGIDIRFFSDAFGHLLAKHRNLKWITFHGLYDMAHMLTMVTKNSLPHSSLEFTELIANV
FGGYVFDIKYIATFCDGLCKGELGLEKLAKILRVKRVGGAHQAGSDSLLSATVFSKLKTV
YGIDESRHVGLLYGIGNQIRKSVRPRVVYPSFTRYCRPKIYPMQGGNFGHLHILLHML
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgccgccgccatgaatcccatcatccctgtttggcgatacaatttctttgac
gaactgaaatgtatcgactcccttcttcatttccatagagttgtttctgtggacactgaa
tttccaggctttctcatcgatactccaagacatgccaatgaatttctaacctactctaat
ttgaagaataatgtggacgcaacaacacttattcaattgggcctcaccttatctgacgag
aacggcaatatcgccggttgctgggaattcaacttctcttttgatgctcaaacagaggta
tgtacggatgatgctttggaatttctgaaagaccatggtattgatttcgacaagttgaag
aacgagggaatcgatattcgtttcttttctgatgcttttggtcatcttttagccaaacat
agaaatttgaaatggattactttccatggattgtatgatatggctcacatgcttacaatg
gttaccaaaaactcactgcctcattcttctcttgagtttactgagttgattgcaaatgtg
tttggtggctatgtttttgatatcaagtatattgcgacattctgcgatggtttatgcaaa
ggcgagttgggattagagaagttagcaaagatacttagagttaaacgagttggtggcgct
catcaagcaggatctgatagtttattaagtgcaacagtattttctaagttgaagacagtt
tatggaattgatgaatcgagacatgtggggttattgtatggcattggcaaccaaattcgc
aaatcagtacgtccaagagtggtgtatccttcatttacgcgctactgtcggccgaagatt
tatcccatgcagggtggaaactttggccatttgcacatcttgttacatatgctgtga
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