Jatropha curcas (Barbados nut): 105649373
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Entry
105649373 CDS
T03922
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105649373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105649373
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105649373
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105649373
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105649373
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105649373
NCBI-ProteinID:
XP_012091393
UniProt:
A0A067JAF2
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MESGKVLQNPRFPTSSAKTMASNELSQKTTPSLLDRFRALLKQREEEARVSAEDDDAAGP
TLSAEEIVQLYELVLDELTFNSKPIITDLTIIAGELREQGEGIADAICARIIEVPVEQKL
PSLYLLDSIVKNIGRDYVRYFSTRLPEVFCEAYRQVHPNLYPSMRHLFGTWSSVFPPSVL
GKIETQLQFSPQVNSQSSGLSSLKASDSPRPTHGIHVNPKYLRQLENSTSDNNAQQHVRG
ASSTLKVYGQKPAIAYDEYDSDHAEVTSSQVGAQRLNTVGTVGTVGHTSFMLGANKLYAS
SSSRLARHAPSSVGAERPLPSEVDDFAMGNSPRRFVEGASPSHPLFDYGPSRPIARDEET
TDWRRKHYSDDIQNRLETSVAYSLSNGHEHQGPRALIDAYGEDKRSRVSNSKPLQIDRLD
VDGMVNKVAPRLWQNTEEEEFDWEDMSPTLADRNRSNDFLSSSVPPFGGVGTRPGFGTRG
PSQLDSDIRSNRSAQAQLSLIDDSSDIAEDSIPILGSGRGSTAKLPGFQPERNQIMASHY
PREAWKLLNHYPQSTDLNAKGRNREFRMPFSRSVISSSVSDSLAPLVDKLPDTDGQYVRP
PTLPSRVGSSIAPSTAGVWPLVNVHKSHPPPVHPIFPPQKQSRSQFDSTNARNTVVNQGL
QQSTFSSEQQFNGFESMEPSLTKQPLLPSRHATLNQQNQAQVNHFQPQFLPSNEARENFP
LSISSLPHQTRVSTLDPVHATQGHGAAMSMVRSNPVPFMLPLPVNNIPNTLQPHAGTRPP
LPPGPHPAQMIHVPQNVGPVAPNQPPGSAFSGLIGSLMAQGLISLTKQTPGQDSVGLEFN
ADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKHKPSRK
WFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDEEMAVPADEEQNACALCGEPFDDFY
SDETEEWMYKGAVYMNAPNGSTAGMERSQLGPIVHAKCRSESSVAPPEDFRCDDGGDSEE
TSHRKRLRS
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagggaaagttcttcaaaaccctaggttcccaactagctctgccaaaaccatg
gccagcaatgagctatcgcagaagacgactccgtcattgctggacaggttcagggctctg
ttgaagcagcgggaagaggaggctagggtttctgcggaggatgatgatgcggcagggcca
actttgagtgccgaggagatagtgcagctttacgagctggtgctcgatgaattgactttt
aattccaaacctatcattaccgatttgacaattattgctggcgagctgagggagcaaggc
gagggcattgcggatgctatctgtgcccgtattatcgaggttccagtcgagcaaaaattg
ccttctttatatctcttggatagcattgtcaagaacattggccgtgattatgttaggtac
ttttctacccgtttgcctgaggttttctgtgaggcatacagacaagttcatcctaactta
tatccttcaatgcggcacctctttggaacatggtcctctgtattcccaccttctgtgctt
ggcaaaattgagactcaactgcaattttctccacaagttaatagtcaatcctctggcttg
tcttccttgaaggcatctgattcaccaaggccgactcatggcattcatgttaatcccaaa
tacttacgtcagttggaaaattcaacttcagataataatgctcagcaacatgttagagga
gcttcttcaactctaaaagtatatggacaaaaacctgccattgcatatgatgagtatgat
tctgatcatgcagaggtcacatcctcacaggttggagcccagagattaaatacagtggga
acagtgggaactgtgggtcatacttcttttatgcttggggctaataagctgtatgcatct
tcaagttctaggctcgcaagacacgcaccttcaagtgttggagctgaaaggcctttgcct
tcagaagttgatgactttgctatgggcaattctcctagaaggtttgttgagggggcttca
ccatctcatcctctgtttgattatgggcccagtagacccattgccagagatgaagaaaca
actgattggagacgaaaacactattctgatgatatccaaaaccgattggaaacttctgtt
gcatatagcctttccaatggacatgagcatcaaggacctagggctttgatagatgcatat
ggagaagacaaacggagtagagtttcaaatagcaaacctttgcaaattgatcgcttagat
gtagatggcatggtcaataaagtggctccaaggttatggcagaatactgaagaggaggaa
tttgattgggaagatatgagccctacattagcagaccgcaataggagcaatgatttctta
tcatcatctgttccgccttttggaggggtggggactaggcctgggtttggaacaagaggt
ccttcccagttggattctgatattaggagcaaccgatctgctcaggctcagctatcattg
atagatgattcctccgatattgctgaagattcaatccccattttgggttctggtcgtgga
tctactgctaagttacctggcttccaacctgagagaaatcagattatggcttcccactat
cctcgagaagcttggaagttgctgaatcattaccctcagtcaacagatctgaatgctaaa
ggaagaaatcgagaattccggatgccattttctagaagtgttatatcctcttcagtcagt
gatagtttggctcctcttgttgacaaacttcctgacactgatggtcagtatgttaggcct
ccaactctcccctcgagagtgggttctagtattgcaccatcaacagcaggagtatggcct
cttgtaaatgtgcataaatctcatccacctcctgtgcacccaattttcccaccacaaaag
cagagtagaagtcagtttgattcaacaaatgcaagaaatactgttgtaaatcagggttta
cagcagtctaccttttcatctgagcaacagttcaatggttttgaaagcatggagcccagt
ttgacgaagcaaccactgttacccagtcggcatgccaccctaaatcagcaaaaccaggct
caagttaatcattttcagccacagtttctcccatctaacgaggctcgagaaaattttcca
ctatctatctcttcattgccacatcagacacgggtatctacactggatccagtacatgcc
acacaaggacatggtgctgccatgagtatggttcgttctaatcctgtaccttttatgctg
cctttacctgttaacaatattccaaacaccttgcaaccacatgctgggactcgtccaccc
ctacctccaggtcctcacccggctcaaatgatacatgtccctcaaaatgttggtccagtc
gcccctaaccaaccaccaggcagtgctttttcgggcttgattggttccctcatggctcaa
ggtttaatctcattgacaaaacaaactcctggacaggattctgtcggactcgagttcaat
gctgatcttattaaggtgcgccatgagtctgcaataagtgctttatatgcagatctcccc
agacagtgcacaacatgtggccttagatttaagtgtcaagaagagcacagtagccacatg
gattggcatgtcactaagaaccggatgtccaagaaccggaagcacaaaccttctcgcaag
tggttcgttgatacaagtatgtggctcagtggggcagaggcattaggaactgatgcagtt
cctggatttttgcctactgagtctgtcgtggagaagaaggatgacgaagaaatggctgtt
cctgctgatgaggagcagaatgcttgtgcattatgtggagagccttttgatgatttctac
agcgatgaaacagaggaatggatgtacaaaggagctgtctacatgaatgcgcccaatgga
tcaacagcaggcatggagaggtcccagttaggtcctatagtacatgctaaatgcaggtct
gagtctagtgtggctccacctgaagatttcagatgtgatgatgggggcgacagtgaagag
actagtcatagaaaacgattgcggagttaa
DBGET
integrated database retrieval system
