Jatropha curcas (Barbados nut): 105649526
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Entry
105649526 CDS
T03922
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03022
Basal transcription factors
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105649526
09124 Replication and repair
03420 Nucleotide excision repair
105649526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105649526
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105649526
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105649526
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105649526
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
YOMG_N
Motif
Other DBs
NCBI-GeneID:
105649526
NCBI-ProteinID:
XP_012091582
UniProt:
A0A067JB09
LinkDB
All DBs
Position
Unknown
AA seq
450 aa
AA seq
DB search
MPQVRIIAKNFMDMVASLPAMKLDKLYANPFICQAILRSLPPLAKKYVLEMLYIDGPVTA
KMLGEWVLADGSSKHKVSIDRLIQLRIFTETVDRKKEASYRLNLTFQTNLQKHLIDREVL
PREPMPPNIVRLPSPEELEAYALGQWECFLLQLINSAQAEKLTNFSSSMIKIFQRGLLSQ
RDKDAARLTEGGFQFLLMDTNAQLWYIIREYISNSEERGIDPPDLISFLLELSFHTPGEA
YNMNTLTDIQRNTIKDLADLGLIKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGFVVV
ETNFRMYAYSQSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ
QNAHPRVAEKIPTVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSRDVFEAACDFAREWS
GLLWEDSKKMRMAVKAELHMNMREFLRGQK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtaagaataattgctaagaatttcatggacatggtggcgtctcttcccgcc
atgaagctggacaagctttacgctaatcccttcatttgccaagctattctcaggtcattg
cctcctttagcgaagaaatatgtgttggaaatgttgtatatagatggtccagtaacagcc
aagatgctgggggagtgggtgctcgctgatggatcctctaagcataaagtctccattgat
cgcttgattcagttgagaatttttactgaaactgtcgataggaaaaaggaagccagttac
agattaaatctaacatttcagactaatcttcagaagcatttaatagatcgtgaagttttg
cctagggaaccaatgcctccaaatattgtaagactcccaagcccagaggaactcgaggca
tatgcccttggacagtgggagtgtttcttgctacaacttataaactcggcccaagcagaa
aagctgaccaactttagctcttctatgattaaaattttccaaaggggtcttttgagtcaa
agggataaagatgctgcccgattaactgagggtggtttccaatttttgctgatggataca
aatgcacaactatggtacataatcagagaatatatctctaactctgaggagcgtggtata
gatccaccagatctgatttcctttctgctagagcttagttttcatacccctggtgaggca
tataatatgaatacattgactgatattcagaggaatacaataaaggaccttgcagacctg
ggattaattaaacttcagcagggcaggaaggagagttggttcatacctactaaattagct
acaaatctttcagtgagcttgacagattcatcatctcggaaacagggatttgttgttgtg
gaaacaaactttaggatgtatgcttattcgcaatcaaagctgcattgtgaaattctgcgt
ttgttttcaagagttgagtatcagctcccaaaccttattgttggagcaataacaaaagaa
agcttgtataatgcttttgaaaatggtatcacagcagaacagataatttcttttcttcag
cagaatgctcatcctcgtgttgcagagaaaatacctactgttcctgaaaatgtgacagat
cagataagactctgggaatcagatttgaacagggttgagatgacccctgcacatttctat
gatgaattcccctcaagagatgtatttgaggctgcttgtgactttgcacgagaatggagt
ggtttactgtgggaggattcgaagaaaatgcgcatggcagtcaaggcagaacttcacatg
aacatgcgagaatttcttcgaggacaaaaataa
DBGET
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