Jatropha curcas (Barbados nut): 105649538
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Entry
105649538 CDS
T03922
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03020
RNA polymerase
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105649538
09124 Replication and repair
03420 Nucleotide excision repair
105649538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105649538
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105649538
Enzymes [BR:
jcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105649538
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105649538
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105649538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
105649538
NCBI-ProteinID:
XP_012091599
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MDDEHEYDQPLNDEEDDGEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
DESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP
SSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG
EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKD
VRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVD
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHD
LVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASII
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
PDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHS
ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKPVKDHKKKGA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgaacatgagtacgatcagcctctgaacgatgaagaagatgatggagaggag
gagatcactcaggaggatgcatgggctgttatttctgcctacttcgaagagaaaggtttg
gtgcgccaacagcttgattcgttcgatgagttcatccagaacacgatgcaggaaatcgtc
gatgagtcagctgatattgagattcgtcctgagagccagcacaaccccggccaccagccc
gattttgctgagactatctacaagataagctttggtcagatatacttgagcaagcccatg
atgaccgagtcagatggagaaactgcaactttatttcccaaagccgcaaggttgaggaac
cttacatactctgcccccttgtatgtggatgttacaaagagggtgataaagaaaggacat
gatggtgaagaagtcactgaaacacaggatttcactaaagttttcattgggaaggttcct
ataatgcttcgttcaagttattgcacactgtaccagaattcagagaaagatctcacggag
cttggggagtgtccttatgatcagggtggctattttatcattaatgggagtgaaaaggtt
ctgattgctcaggagaagatgagcaccaatcatgtttatgtgttcaagaagaggcagcca
aacaagtatgcatatgtggcagaagttcggtctatggcagagtcccagaaccgtccacct
agttccatgtttgtgcggatgctttctcggactagtgccaaggggggatcttcagggcag
tatattagggctacacttccatatattcgaactgaaattccaattattattgtgtttcgg
gcgctgggatttgttgctgacaaagatatattagaacacatatgctatgatttctctgat
actcaaatgatggagttgctacggccttctctagaagaagcttttgtgattcaaaatcaa
caggttgcactggactacattggtaagcgtggagctactgtcggtgtaactagagaaaaa
aggataaagtatgctaaagagatccttcaaaaggaaatgcttcctcatgttggtgttgga
gaatattgtgagacaaaaaaagcttactattttggttacatcattcaccggcttctactt
tgtgcactgggacggcgggcagaagatgacagagatcattatggcaacaagaggctcgac
cttgctggtcctttactcggtggactctttcgaatgttattcagaaagttgaccaaggat
gtcagatcttacgtgcagaagtgtgtggataatgggaaggatgtcaatctgcaatttgct
attaaagcaaaaaccattactagtggtcttaaatattcgcttgccacggggaactggggg
caagcaaatgctgctggtacaagagctggagtgtcacaggtgttaaatcgattgacatat
gcatctacgttgtcacatttgcgaagattaaattctccaattgggcgtgaaggtaaattg
gctaaaccaaggcagttgcataattcacaatggggaatgatgtgccccgctgaaacacct
gaaggacaagcttgtggattggtgaagaatcttgcattgatggtgtatataactgtcgga
tcagctgcatatcctatcctggaatttttggaagaatggggcactgagaattttgaggaa
atatctcctgctgttattccccaagctacaaaaattttcgttaatggttgctgggtgggt
atccatcgtgatcctgatatgttggtcaagacattgagacgactgagaagacgggttgat
gttaatactgaagttggggttgttagagatattcgtttgaaagagctgcggatatacact
gactacggtcgttgcagtcgtcctttgttcattgttgagaaacagaggcttctcataaag
aaaaaggacattcatgcactccagcagagggaatcctctgaagagggtggctggcatgat
cttgtggctaaaggtttcattgaatatattgatacagaggaagaagaaaccaccatgata
tccatgaccattcatgatcttgtacaagcacgaatcaacccggaggaagcttattctgat
acttacacccattgtgaaatccacccttcacttattttaggtgtttgtgcttcaattatt
ccttttcctgatcataaccagtctcctcgtaacacttatcaatctgctatgggaaagcaa
gctatgggaatatatgtcaccaactatcaatttcgaatggatacattggcgtatgttctt
tattatcctcaaaaaccacttgttactacaagagctatggagcaccttcactttaggcag
cttccagctggcattaatgctattgttgccattgcctgctattctggatacaaccaagaa
gattctgtgattatgaatcaatcatcaatagaccgtggattctttagatcactgttcttc
cgttcatacagggatgaggagaaaaagatggggacactagtcaaagaagattttgggcgg
ccagacagagctaacacaatgggcatgcggcatggctcctatgataaattggatgatgat
ggccttgcacctccgggtacaagagtttcaggtgaggatgtcatcattggaaagaccact
cctattgctcaagaagaagctcagggacaatctgcacgttacacaaggcgggatcacagc
ataagcttacgtcatagtgaaacaggaatagtggatcaagttctcctgacaacaaatgct
gatggattgagatttgttaaagtaagggtgaggtctgtccgcatacctcaaattggagac
aaatttagcagtaggcatgggcaaaagggaacggtgggaatgacttacactcaagaagac
atgccttggaccgtggaaggcattacccctgatatcattgtgaacccacatgctattccc
tcccgaatgacaattggtcagcttattgaatgtattatggggaaggttgcagctcacatg
ggaaaggaaggggatgctaccccatttactgatgttactgtggacaacattagcaaggct
cttcataaatgtgggtatcagatgcgtggatttgagaccatgtacaatggtcacactggt
cggcggcttacagctatgattttccttggccctacttattaccaaagactgaagcatatg
gttgatgacaagatccattcacgtggaaggggacccgtgcagatccttactaggcaacct
gctgaaggacggtcacgtgatggtggcctccgttttggggaaatggaacgggattgcatg
atagcacatggcgcggcacactttctcaaagagaggctgtttgaccagagtgatgcctac
agagtccatgtttgtgaacgatgtggattgatagccattgcaaatctaaagaagaattct
ttcgaatgcagaggttgcaagaataagactgacattgttcaggtgcacattccatatgcc
tgtaagctgctcttccaagagcttatggccatggccatagcaccgagaatgctcacaaaa
gatataaaaccagtcaaagaccataagaaaaaaggagcctaa
DBGET
integrated database retrieval system
