KEGG   Jatropha curcas (Barbados nut): 105650034
Entry
105650034         CDS       T03922                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03018  RNA degradation
jcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105650034
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105650034
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105650034
   03041 Spliceosome [BR:jcu03041]
    105650034
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105650034
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105650034
Spliceosome [BR:jcu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105650034
 Complex C
  U2 snRNP components
    105650034
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 105650034
NCBI-ProteinID: XP_012092296
LinkDB
Position
Unknown
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIDLLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctgttcttttcgtatttcaaggacttggtgggtagagaagtgaccgtggagctcaag
aatgatttggcaattagaggaacgctccattctgttgatcagtacctcaatatcaagctc
gagaatactcgggttgttgatcaagacaagtaccctcacatgctttcagtgaggaattgt
ttcatcaggggatccgtggttagatacgttcaattgcctccagaaggtgttgacatcgat
ctgcttcatgacgcaacaagaagagaagctcggggtggctga

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