Jatropha curcas (Barbados nut): 105650044
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Entry
105650044 CDS
T03922
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105650044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105650044
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105650044
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105650044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
End3
EXOSC1
Motif
Other DBs
NCBI-GeneID:
105650044
NCBI-ProteinID:
XP_012092306
UniProt:
A0A067JNC2
LinkDB
All DBs
Position
Unknown
AA seq
321 aa
AA seq
DB search
MREIQLPLNQTQKVRLQRALQQLESLHAKVNSEASVTVADTIPINLEDSILKGHGTAERD
GEMVATICGVVERVNMLVYVRSLRARYKPEIGDIVVARVLEVAQKRWKLDINFNQDAVLM
LSSMNLPDGIQRRRTAVDELNMRNVFEENDVICAEVRNFQNDGSLQLQARSQKYGKLEKG
QLLTVPPYLVKRQKQHFHHLVQYDVDLILGCNGFIWVGEHVDARDIVAEDQVNNTEEQNT
KSSRASEDVPLETRQNICRIANAIRVLSTLGFSLTLEVILETVNLSSMLNLGIDEMLGSE
FHVVVAEKEAERRSLLTKKKR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaatacagctaccgttaaatcaaacacaaaaagtaagattacagagagctctg
caacagcttgaatctttacatgccaaagtcaattccgaagcttccgtcaccgtcgccgat
actatccccattaacctcgaggacagcattctcaagggacatggaaccgcggagcgggac
ggtgaaatggtggcgacgatatgtggagttgtagagcgcgttaacatgctcgtctatgta
cggtctttgcgcgccagatataagccagagatcggggatatcgtagtggcccgtgtcctt
gaggttgcccaaaagcgatggaaattggacataaatttcaaccaagatgctgtgttaatg
ctttcttccatgaacttacctgatggtattcagagacggcgaactgctgttgatgaactc
aacatgcgcaatgttttcgaggagaatgatgttatttgtgctgaagttcgcaattttcag
aatgatggtagtttacaactgcaagcaagaagtcagaagtatggaaagcttgagaagggt
caattgctgacagtccctccttatcttgtgaaaagacaaaaacagcatttccatcatcta
gtacaatatgatgttgacttaatacttggatgtaatggatttatatgggttggtgaacat
gttgatgccagagatattgtggcagaagatcaagtaaacaatactgaagaacaaaatacc
aaatccagtagagcttctgaagatgtacctcttgagacaaggcagaacatttgccgcatt
gcaaatgctatccgtgtattgtcaactttaggcttcagtttaactttagaagtgatactg
gagactgtcaacttgagtagcatgttgaatcttggtatagatgaaatgcttgggtcagag
ttccatgttgtggtagcagaaaaagaggctgaacgccgcagtttgttgacaaaaaagaag
agatga
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