Jatropha curcas (Barbados nut): 105650287
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Entry
105650287 CDS
T03922
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03022
Basal transcription factors
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105650287
09124 Replication and repair
03420 Nucleotide excision repair
105650287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105650287
03036 Chromosome and associated proteins [BR:
jcu03036
]
105650287
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105650287
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105650287
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105650287
Chromosome and associated proteins [BR:
jcu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
105650287
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105650287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105650287
NCBI-ProteinID:
XP_012092547
UniProt:
A0A067JKA4
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
LSKPQTQLKLIYCTRTVHEMEKTLAELKLLHNYQIKHLGPAARILAIGLSSRKNLCVNPT
VLSAENRDSVDAACRKLTASWIRAMAAENPNVPTCEFFENYERAASSAVLPPGVYTLQDL
RAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSIRRQTLDGASRNLSRISQEIERFKATDAGRLRAEYNRLVEGLAQRGNLAA
ADTWLANPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKESPISFITS
LNSHAVIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYSRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPISTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV
SYSYMDGIINSWNETGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILISRLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDANLNLSTDMALHIAREF
LRKMAQPYDKTGVSGRKTLLSQEDLEKMAESGLQEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccaaattgaggatgtgactgtctacttcccatatgacaatatttatccagag
cagtattcatatatggtggagctaaaacgtgctttagatgccaagggacactgcctgcta
gaaatgccaacaggcaccgggaagaccatagcactgctgtccttaatcacaagctacact
ctttccaagccacagacccaactgaagctaatctactgcacacgcactgtgcacgagatg
gagaaaacccttgccgagctcaaactgttgcacaattatcaaatcaagcatttgggacct
gccgcaaggattttggccattggattgtcgtcaagaaagaatctttgtgtgaatccaaca
gttctgtcagccgagaatcgggattcagtggatgctgcttgtaggaagctcacagcaagt
tggattagggctatggctgcagagaatcccaatgtaccaacttgtgagttctttgagaac
tatgaaagggcggcatcttcagcagtgttgccacctggagtttacactcttcaggatctg
agagcatttggaaaggaaaaaggatggtgcccatatttcttggcaaggcatatggtgcag
tttgcaaatgtggtggtctatagttaccagtacttgcttgatccaaaggtagctggtatc
atatcaaaggaaatgcaaaaggagtctgttgtggtgtttgatgaggcacataatattgat
aatgtgtgtatcgaagcccttagcgttagcatacgaaggcagacacttgatggggcttcc
agaaatctctcaagaatcagtcaggagattgagaggttcaaggccaccgatgctggtagg
ttgcgtgctgaatacaaccggcttgttgagggtttggcgcaacgaggaaacctagctgcc
gcagatacatggcttgcaaatcctgccttgcctgatgatattctgaaggaggcagttcct
ggaaatattcgtcgagcagagcattttctgcatgtcttgcgtaggttggttcaatacctg
agaggccggctggaaacagagaatgttgagaaggaaagtccaattagctttattacatct
ttaaactctcatgctgtgattgaccagaaaacgctgaagttttgttatgatcgcctacat
tcacttatgttgacactggagataacagacacagatgagttcttgcatatccagacgata
tgtgactttgcaacgcttgtggggacttatagtcgcggattttccatcataatcgaacct
tttgatgagagaatgccacatattcctgaccccgtattgcagcttagctgccatgatgct
tctcttgccataaagccggtatttgacaggttccagtcagttgtgattacttctggaact
ctgagcccgattgatctctaccctcgtcttcttaacttccatccagttgttagtcgaagc
tttacaatgtccttgactagagattgtatatgcccaatggttctcactcgtggaagtgac
caactcccaataagcaccaaatttgatatgagaagcgatccaggtgttgcaaggaattat
gggaagctcttggtggagatggtctctattgttccggatggaattgtatgtttttttgtc
agttactcatacatggatggaattatcaacagctggaatgaaactggaattcttaaggac
ataatgcaacataagcttgtctttattgagacccaggatgtagtggaaactacattggct
cttgacaactatcgcagggcatgtgattgtgggagaggtgcagtttttttctctgttgct
aggggaaaagtagctgaaggaatagattttgatcgacactatggtagactagtgatcatg
tttggtattcctttccagtatacattaagcaaaatattaatttcacggttggagtatcta
cgggacacatttcaaataaaggaaggcgatttcctaacgtttgatgctttgagacaagca
gctcaatgtgttggccgagtgatcaggtcgaaggctgattatgggatgatgatatttgct
gataaaagatatagccgtcatgacaagcgctcaaagttgcctggctggatactgtcacat
ttgcgtgatgcaaacctgaatttgagcactgacatggctttgcatatagcacgtgagttt
cttcggaagatggctcaaccatatgataagaccggagtaagcggtcgaaaaaccttgttg
tcacaagaagacttggaaaagatggccgaaagtggactgcaggaaatgttgtattag
DBGET
integrated database retrieval system
