Jatropha curcas (Barbados nut): 105650400
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Entry
105650400 CDS
T03922
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105650400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105650400
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105650400
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105650400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
105650400
NCBI-ProteinID:
XP_012092684
UniProt:
A0A067JC18
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLTVKKGKSRPPRLTHLEASIVRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYNSLPLDKVES
LEDLVTIGPPGLVKGAPVHTLKTSLASSASQIPATVTPAHQQATSVQEQPDDTASQDSNS
DIVARTPPAKSSMIGSAASTPTVNHATPVSASAPPHTVSGVTTPSILPTSTPVRSVLEIA
ATAIPSSPATLANSAKEEEVAGFPVRRPSPALSDTGLTRGIGRGSLSSQPSPSIPISSAA
VPSNGTLGAVPSVSDIAKRNILSTDDRLGSSAMVQPLTSPLSNRMILPQTGKSNDGTSIV
DSSNVGEAAGIGGRVFSPSLVPSMQWRPGSSFQNQNEPGQFRARTEIAPDQREKFLQRLQ
QVQQQGHSTLLGMPPLAGGNHKQFSAQQNPLLQQFNSQSPSVSPQANLGLGVQASGLNTV
TSAALQQPNTIHQQASQQVVMSSGAKDADVSLSKVEEQQQPQNLPDDSTPESAPSSGLSK
NLVNEDELKTAYTMDTSTGASGSLAEPAQMPRDIDLSPGQPIQSSQPSTGLGVIGRRSVS
DLGAIGDNVSGSAVNSGAMHDQIYNLQMLEAAYHKLPQPKDSERARSYTPRHPAATPPSY
PQVQAPIVNNPGFWERLTIDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRFHRKYNT
WFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtcgcaaactacaaggcgagattgatcgcgttctgaagaaagtccaagaa
ggcgttgatgtgtttgatagcatctggaataaggtttatgatacggacaatgcaaatcaa
aaggagaaatttgaggcagatttgaagaaggaaataaaaaagctgcagagatacagggat
cagatcaaaacatggattcaatccagtgaaatcaaggataagaaggttagtgcctcatat
gagcaggctttggtggatgctcgtaagcttattgagcgtgaaatggagagatttaagatc
tgtgagaaggaaacaaagacaaaagccttctctaaagaagggttgggccaacaaccgaaa
actgacccaaaggagaaggccaaatcagagacaagggattggttgaacaatgtggtaggg
gagttggaatctcagattgatagctttgaagctgagattgaggggctgactgttaagaag
ggaaagtcaaggccacctagactgacacatttagaggcatccattgtgaggcacaaggct
catataatgaaattagaattaattctgaggctgctggataacgatgaattgagtcctgag
caggtcaatgatgttaaagacttcctggatgactatgtggaacgaaatcaggaggatttt
gaagaatttagcgacgttgatgagctttacaactcgttgccattagacaaggtggagtct
cttgaagatttggttaccattggtcctcctggccttgttaagggtgcaccagttcatacc
ttgaagacatctttggcatcatcagcatctcaaatacctgctaccgtgactcctgctcat
cagcaggctacttctgttcaggagcaacctgatgatacagcatctcaggatagtaattct
gatattgttgcaagaacaccgcctgctaaaagcagtatgattggttctgctgcatcgaca
ccaactgtgaatcatgcaactccagtttctgcaagcgctccacctcatacagtgtctggt
gtgacaacaccttcaattcttccaacgtcaactccagttcgcagtgtgttggaaattgca
gccactgctattccttcatctcctgcaacattggcaaattctgcaaaggaagaagaagtt
gcaggttttcctgtccgtagaccatcaccagctctttctgatactggactaacaaggggc
atcggtagaggcagcctttctagccagccctctcctagtattcctattagttctgctgca
gttccaagcaatggaacccttggtgcagtaccttcagtatctgacattgcaaaaagaaat
attttatcaacggatgatagacttggaagtagtgcaatggtgcaacctttgacttctccg
ctaagtaatcggatgatcttgcctcagactggcaagagtaatgatggaactagcatagtt
gattctagtaatgttggtgaagctgcgggaattggtggaagagttttttcaccttctttg
gtccccagcatgcaatggagacctggaagttcttttcaaaatcagaatgaaccgggacaa
tttcgtgcaagaactgaaatagcacctgatcaaagggaaaaatttttgcaacgtcttcag
caagtccagcaacaaggtcacagcacccttcttggtatgccacctcttgctggtggaaat
cataaacagttttctgcccaacaaaatccactactgcagcagtttaattctcaaagccca
tctgtctctccacaagctaatctgggacttggagttcaggcatcaggtctcaataccgtt
acgtcggcagcgttacagcagccaaataccatccaccaacaggctagtcaacaagtcgtg
atgtctagtggtgcaaaagatgctgatgttagcctttcaaaagttgaggagcagcagcaa
cctcaaaatttacctgatgattcaacccctgagtctgctccttcatctgggctgagcaaa
aatcttgtgaatgaggatgaattgaaaacagcctacacaatggatacttctacaggagca
tctggctctttggcagagcctgcccagatgccaagagatattgacctctcccctgggcaa
cccatacaatccagtcaaccttctactggccttggtgttattggtcggagaagtgtctct
gatcttggtgccattggtgataatgtcagtggatctgctgtgaattctggggcaatgcat
gatcagatatacaacttgcagatgctcgaggcagcatatcacaagcttccccaaccaaag
gactcagaacgtgctaggagctatactccaaggcaccctgcagccacacctcctagctat
ccccaagttcaggcacccattgtaaataatcctggattctgggaacgactgactattgat
agttatggcactgatacattgttctttgcgttttactatcaacagaatacctatcagcaa
tacttggccgcaaaagagctaaaaaagcaatcctggagatttcatagaaaatataacacc
tggtttcagcggcatgaagagcccaaagttgcaactgatgaatatgaacaggggacttac
gtgtactttgatttccatattgccaatgatgacctccaacatggatggtgtcaaagaatc
aagactgagttcacttttgagtataactatcttgaagatgaacttattgtttag
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