Jatrophihabitans cynanchi: M6B22_04840
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Entry
M6B22_04840 CDS
T09893
Name
(GenBank) penicillin-binding transpeptidase domain-containing protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
jcy
Jatrophihabitans cynanchi
Pathway
jcy00550
Peptidoglycan biosynthesis
jcy01100
Metabolic pathways
jcy01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
jcy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
M6B22_04840
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
M6B22_04840
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
jcy01011
]
M6B22_04840
Enzymes [BR:
jcy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
M6B22_04840
Peptidoglycan biosynthesis and degradation proteins [BR:
jcy01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
M6B22_04840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
WAX58100
LinkDB
All DBs
Position
complement(986300..988393)
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AA seq
697 aa
AA seq
DB search
MADERAFRHRPPGARRLTIIVVLVASMVATLLGRLYYVQLLDPNKPAQTADRLHEGVIVV
PAPRGLILDARGRPLVQNTSAQVVTVDRETLQGLPDKGAAVLGKLAGLLGTSAARLAAEI
TPCSPKVPAPCWIGEPFQPVPVATAASTAVVLALGEHREDYPGVAVETVSLPEYPYGTLA
AHVLGYTGKVAEADTSQNPALSDVDTIGRTGLQAQYDSILRGTDGRQTLLLNPQGYAVRQ
ATNVPAVQGDTLITSIDLDVQRIAEQSLAQEIADRRAHGLPATSGAVVVMDPNTGRIIAI
ASSPTYDPQQFVGGISDADYAELTAPAANDPLVGRAIAGQYAPGSTFKLITSSSLLIHHE
ISLGGTYPCPGSLTIDGRVKTNYDSESFDYPLSLKDALGYSCDTFFYAPAAAEYYRDQTR
ISDGKKPNEYLQRTAALYGVGTQPGIDLPADEQAAGSYADRETRMTRWRTQRTQYCGDAR
RGYPEVADRTQRAYLTQLASENCTDGWRYRAGDNADMSIGQGETTMSPLQLAVAYSALVN
GGKIWEPRLGWAVVDHNGKTVRTIEPKLRRTVPVSRTYLNYIADSLDFGRGWAVSGAFAY
IGSPYQSRLGGKTGTAEVEGKKDTSWLASWGPTSHDRKGNVGAKFVVVGMIEQAGTGATA
AGPMLKRIWDAIMGAHGKPIVAGKKPITTLPKVTQTR
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacgagcgtgccttcaggcaccggccgcccggtgcccgccggctgacgatcatc
gtggtgctggtcgcctcgatggtggccaccctgctcgggcggctgtactacgtgcagctg
ctcgacccgaacaagccggcgcagaccgccgatcggctgcacgagggcgtgatcgtggtg
cctgcgccgcgtggcctgatcctcgacgcgcgtgggcgtccgctggtgcagaacacgtcg
gcgcaggtggtcaccgtcgaccgcgagacgctgcaggggttgcccgacaagggcgccgcg
gtactcggcaagctggccggcctgctcggtaccagtgctgcccggctggccgcggagatc
accccgtgctcgccgaaggttcccgcgccgtgctggatcggcgagccgttccagccggta
ccggtcgcgacggccgcgtcgaccgcggtggtgctggcgctcggcgagcaccgcgaggac
tatccgggcgtcgcggtcgagacggtgagcctgccggagtacccgtacggcacgctggcg
gcgcacgtgctgggctacaccgggaaggtcgccgaagcggacacgagccagaacccggca
ctgagtgacgtcgacacgatcgggcgcaccgggctgcaggcgcagtacgactcgatcctg
cgcggcaccgacggcaggcagacgctgctgctcaacccgcagggctacgcggtgcgccag
gccacgaacgtcccggccgtacaaggcgacacgctgatcaccagcatcgacctggacgtg
cagcggatcgccgagcagtcgctcgcgcaggagatcgccgaccgccgcgcgcacgggttg
ccggccacatccggcgccgtcgtggtgatggacccgaacaccgggcgcatcatcgcgatc
gccagttcgccgacctacgatccgcagcagttcgtcggcggcatctccgacgccgactac
gccgagctgaccgcgcccgcggcaaacgaccctctggtgggccgggcgatcgcgggccag
tacgcccccggttcgacgttcaagctgatcacctcgtcctcgttgctgatccaccacgag
atctcgctcggcggcacctacccctgccccggctcgctcacgatcgacggccgcgtcaag
acgaactacgacagcgagtccttcgactacccgctctcgctcaaggacgcgctcggctac
tcgtgcgacacgttcttctacgcccccgccgcggccgagtactaccgcgaccagacccgc
atcagcgacggcaagaagccgaacgagtacctgcagcggacggccgcgctgtacggcgtc
gggacgcagccggggatcgacctgccggcggacgagcaggcggccggttcctacgccgac
cgcgagacccggatgacccgctggcggacgcagcggacgcagtactgcggggacgccagg
cgcggctacccggaggtcgccgaccgcacccaacgcgcctacctgacccagctcgcgtcg
gagaactgcacggacggctggcgctaccgggccggcgacaacgcggacatgtcgatcggg
cagggggaaacgacgatgtcgccgctgcagctcgcggtggcgtactcggcgctggtcaac
ggcgggaagatctgggaaccacggctcggctgggccgtcgtcgaccacaacggcaagacg
gtgcggacgatcgagcccaagctgcgccgcaccgtgccggtcagccgcacgtacctgaac
tacatcgccgactcgctcgacttcggccgcggctgggccgtgtccggcgcgttcgcctac
atcggctcgccgtaccagtcgcggctcggcggcaagaccggcaccgcggaggtcgagggc
aagaaggacacctcgtggctggcgtcctgggggccgaccagccacgaccgtaaggggaat
gtcggcgcgaagttcgtcgtggtcggcatgatcgaacaggccggcacgggcgccaccgcg
gcgggcccgatgctcaagcgcatctgggacgcgatcatgggcgcccacggcaagcccatc
gtcgcgggcaagaagccgatcaccacgctgccgaaagtgacccagacgcgatga
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