Jatrophihabitans cynanchi: M6B22_12210
Help
Entry
M6B22_12210 CDS
T09893
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jcy
Jatrophihabitans cynanchi
Pathway
jcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M6B22_12210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcy03019
]
M6B22_12210
03009 Ribosome biogenesis [BR:
jcy03009
]
M6B22_12210
Enzymes [BR:
jcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M6B22_12210
Messenger RNA biogenesis [BR:
jcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M6B22_12210
Ribosome biogenesis [BR:
jcy03009
]
Prokaryotic type
rRNA helicases
M6B22_12210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
WSD
Motif
Other DBs
NCBI-ProteinID:
WAX55312
LinkDB
All DBs
Position
2493104..2494795
Genome browser
AA seq
563 aa
AA seq
DB search
MTSFAGLDLRPELQQALDSLGYEEPTPIQREAIPQLLAGHDLIGQAATGTGKTAAFALPI
LNVHTPGGRDPYALILVPTRELAIQVSEAIHRYGRDLGARVLPVYGGQPITRQIRALESG
IDVVVATPGRAIDHLARKTLRTDNLRIVVLDEADEMLDMGFAEDIEAILQEIPAQRQTVL
FSATLPARINGLVKRYLTDPVKVKIHREEKGGAAKRVRQVAYLAPRAHKPSALGRLLDIE
QPAAAIVFCRTREEVDSLSQSMTARGYRAEALHGGMTQDHRDRVMQRVRSGAAELLVATD
VAARGLDIDHLTHVVNYDVPSAPDAYVHRIGRVGRAGREGVAITLVEPRQHRLLKTIEKA
TKQAIAVEKLPTVADLRARRLELTRAALHEALEEDDVEQFRVVVDTLTDEFDLMQVALAA
VKLAHEASGPVDADDEIPDVTVPRDGDRPAERGRDGGKGSHAAKGSPRAVSGGESTRIFV
SLGHAAKIRPQDLVGAIANETSLSGRQIGAIEITHKFSIVEIPEQSVDEVVAALQATLIK
GRKAKVERYKPRTERPERSGANR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
gtgactagcttcgccggactggacctgcgcccggaactgcagcaggcgctcgactcgctg
gggtacgaggagccgacgccgatccagcgtgaggcgatcccgcagttgctggccggccac
gacctcatcggccaggccgcgaccggcaccggcaagaccgccgccttcgcgctgccgatc
ctgaacgtgcacacccccggcgggcgggatccgtacgcgctgatcctggtgccgacccgc
gagctggcgatccaggtgtctgaggcgatccaccggtacggccgcgacctgggtgcccgg
gtgctgcccgtctacggcggccagccgatcacccggcagatccgcgcgctcgagtccggg
atcgacgtcgtcgtcgccacccccggccgcgccatcgaccacctggcccgcaagacgctg
cgcaccgacaacctgcgcatcgtggtgctggacgaggccgacgagatgctggacatgggc
ttcgccgaggacatcgaggcgattctgcaagagatcccggcacagcggcagaccgtgctg
ttctccgcgaccctgccggcgcgcatcaacgggctggtcaagcgctacctcaccgacccg
gtcaaggtgaagatccaccgcgaggagaagggcggcgcagccaagcgggtgcgccaggtg
gcctacctcgccccccgcgcgcacaagccgtccgccctcggccggctgctggacatcgag
caacccgccgccgcgatcgtcttctgccgcacccgcgaggaggtcgactcgctcagccag
agcatgacggcgcgcggctaccgggctgaggcgctgcacggcggcatgacccaggaccac
cgcgaccgggtgatgcagcgggtgcgcagcggcgcggccgaactgctcgtcgccaccgac
gtcgccgcccgcgggctggacatcgaccacctcacccacgtcgtcaactacgacgtgccg
tcggcaccggacgcgtacgtgcaccgcatcggacgggtcgggcgcgccgggcgcgaaggc
gtggccatcacgctcgtcgagccgcgccagcaccggctgctcaagacgatcgagaaggcc
accaagcaggccatcgcggtcgagaagctgcccaccgtggccgatctgcgggcgcgccgg
ctggagctgacccgcgccgcgctgcacgaggcgctggaagaggacgacgtcgagcagttc
cgcgtggtcgtcgacacgctcaccgacgagttcgacctgatgcaggtcgcgctggcggcg
gtcaagctcgcgcacgaggccagcgggccggtcgacgcggacgacgagatccccgacgtc
acggtcccgcgcgacggggaccgcccggccgagcgaggtcgcgacgggggcaagggcagc
cacgccgcgaaggggtcgccccgtgcggtgtcgggcggtgagtccacccgcatcttcgtc
agcctcgggcacgccgccaagatccgtccccaggacctcgtcggcgcgatcgcgaacgag
accagcctgtccggccggcagatcggcgccatcgagatcacccacaagttctccatcgtc
gagatccccgagcagtccgtcgacgaagtcgtcgcggcactgcaggcgaccttgatcaag
ggtcgcaaggcgaaggtggagcggtacaagccgcgtaccgaacgaccagaacgatcagga
gcgaacaggtga
DBGET
integrated database retrieval system
