Jatrophihabitans cynanchi: M6B22_15020
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Entry
M6B22_15020 CDS
T09893
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jcy
Jatrophihabitans cynanchi
Pathway
jcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M6B22_15020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcy03019
]
M6B22_15020
03400 DNA repair and recombination proteins [BR:
jcy03400
]
M6B22_15020
Enzymes [BR:
jcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M6B22_15020
Messenger RNA biogenesis [BR:
jcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M6B22_15020
DNA repair and recombination proteins [BR:
jcy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M6B22_15020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
MarR_2
HTH_IclR
HTH_53
Motif
Other DBs
NCBI-ProteinID:
WAX55844
LinkDB
All DBs
Position
complement(3066112..3068253)
Genome browser
AA seq
713 aa
AA seq
DB search
MATPTRQLNGAALEHTALRDRAEEHLRALAGPDAALRTDQWTAIEALVADRRRALVVQRT
GWGKSAVYFVATALLRAGGAGPTVIVSPLLALMRNQIAAAERAGIHAVTINSTNVEDWQH
TYDAVARGDVDVLLLSPERLNNPEFRDNVMPRLAASCGLLVVDEAHCISDWGHDFRPDFR
RLRTLLPQLPSGIPVLATTATANSRVVQDVADVLGLGASDDDVLVLRGSLDRESLHLGVV
HLPDTAHRLAWLAEHLAALPGSGIVYTLTVAASQEVAGYLRERGLPVAAYSGQTEQTERL
AAEDDLIHNRVKALVATSALGMGFDKPDLAFVVHFGAPSSPIAYYQQVGRAGRGVERAEV
VLLPGSEDEAIWSYFTSVGFPAEQQVRTALGVLAGSGGPLSLAALETRVELSRSRLEAML
KVLDVDGAVTRVKGGWVATGEPWHYDTDRYARVAQVRRDEQQAMRDYLGTARCRLRFLRE
QLDDAEDEDCGRCDNCGGLHLSTSASDTAVSAATATLHRPGVPFDPRRMWPSAMPNLGVD
VRGKLGPGELAERGRALARYTDLGFGAQLRTLLTGDAPDGPVPTEVLRACVRVLAEWDWT
RRPEAVVHVGSLRRPALVGDLAARLGEVGRLPHLGAVTHVGRSARARSNSALRLREVWGS
YVLGDVLAAAVDGRDVLLVDDYTDTGWTLTVIARLLREAGASGVFPFVLGIAS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggccacccctacccggcaactgaacggcgccgcactggagcacacggcattgcgcgac
cgggccgaggagcacctgcgcgcgctcgccggtccggacgcggcgctgcgaacagatcag
tggacggcgatcgaggcgctggtcgccgatcggcgccgggccttggtggtgcagcgcacc
ggctggggcaagtcggccgtctacttcgtggccaccgcactgctccgggccggcggagcc
gggccgaccgtgatcgtctcgccactgctcgccttgatgcgcaaccagatcgcggctgcc
gagcgggccggcattcacgccgtcacgatcaactcgaccaacgtcgaggattggcagcac
acctacgacgcggtcgcgcgcggagacgtcgacgtcctgctgctctcgccggaacggctg
aacaacccggagttccgcgacaacgtgatgccgcgactggcggcgtcctgcggcctgctg
gtcgtcgacgaggcgcactgcatcagtgactgggggcacgacttccggcccgacttccgc
cggctgcgcacgctgctaccgcagctgccgtccgggatcccggtgctggccaccacggct
acggcgaacagccgcgtcgtgcaggatgtcgcggacgttctcgggctgggcgcgtccgac
gacgacgtgctggtgctgcgcggcagcctggatcgcgaatcgcttcatctcggcgtcgtg
cacctgccggacaccgcgcaccggctggcctggctggccgagcacctggccgcgctgccg
ggctcgggcatcgtctacacgctgacggtcgccgcctcgcaggaggtcgccggctacctg
cgcgaacgcggcctgcccgtcgcggcgtactcggggcagaccgagcagaccgagcggctc
gccgccgaggacgacctgatccacaaccgggtcaaggcgcttgtcgcgacgtcggcgttg
ggcatgggtttcgacaagccggacctggccttcgtggtgcacttcggcgcgccgtcctca
ccgatcgcgtactaccagcaggtcggccgcgccggccgcggcgtcgagcgcgccgaggtg
gtgctcttacccggcagtgaggacgaggcgatctggtcgtacttcacctcggtcggtttc
cccgccgagcagcaagtgcgcacggccctgggggtcctggccggctccggggggccgctg
agcctggccgcgctggagacccgggtcgaactgtcccgctcgcggctcgaggcgatgctc
aaggtgctggacgtcgacggcgcagtcactcgggtcaagggaggctgggtcgcgacgggc
gagccgtggcactacgacaccgaccggtacgccagagtcgcccaggtgcgccgcgacgaa
cagcaggcgatgcgcgactacctgggcaccgcccgttgccggctgcggttcctgcgcgaa
cagctcgacgacgcggaggacgaggactgcggccgctgcgacaactgcggcggcctgcac
ctgtccaccagcgcgtcagacaccgcggtgagtgcggcgacggcgacgctgcaccggccg
ggcgtgccgttcgacccacgccggatgtggccctcggcgatgcccaacctcggcgtggac
gtgcgcggcaagctcgggcccggcgagctggccgagcgcggccgggcgctggcgcgctac
accgacctgggcttcggcgcacagctgcgcacgctgctcaccggggacgcgccggacggc
ccggtcccgaccgaggtgctgcgcgcctgcgtccgcgtgctggccgagtgggactggacg
cggcgtcccgaggccgtggtacacgtcggctcgctccggcggcccgcgctggtcggcgac
ctggcggcccggctcggcgaggtcggccggctgccgcacctgggggcggtcacgcacgtc
ggccggtccgcccgcgcgcgctcgaacagcgcactgcggttgcgcgaggtctggggcagc
tacgtcctcggcgacgtgctggcggccgcggtcgatgggcgcgacgtgctgctcgtggac
gactacaccgataccggctggacgctgaccgtcatcgcccggctgctgcgcgaggcaggc
gcgagtggggtgttccccttcgtgctcggcatcgcctcgtga
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