Jatrophihabitans cynanchi: M6B22_15430
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Entry
M6B22_15430 CDS
T09893
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jcy
Jatrophihabitans cynanchi
Pathway
jcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M6B22_15430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jcy03400
]
M6B22_15430 (mfd)
Enzymes [BR:
jcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M6B22_15430 (mfd)
DNA repair and recombination proteins [BR:
jcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M6B22_15430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WAX55920
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All DBs
Position
3161581..3165141
Genome browser
AA seq
1186 aa
AA seq
DB search
MALSGLLTTAAADPALTVAADDAGAPSLTISGPPAVQPLVIATLASRAGRPVLAVTSTER
EAEELLATLRCLLPPDQVALYPGWETLPHERLSPRADTVGQRLAVLRRLRHPSLHDPAAG
PLAVVVAPVRSVLQPQVPGLGELTPVELRPGDSRELTALVTDLVGAGYTRAELVEKRGDF
AVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFRVVDQRSLEVAPHGLWAPPCRELLLTE
QVQQRAADLLAEHPQLGELLDPISRGEAVEGMEALAPVLVEGGRLELVLHELPAGSHVLV
CDPERVRARAADLVRTSQEFLGASWAVAAEGGKTPIELGAASLRELEDVVAEAARIGLPW
WAVTALTADASIGADVVASGFEQAPTFRGDTEAAMTQLRTWTREGWQVTLVFDGHGSAQR
AVERLSAAEVPARLTDTVTGTSGVVEVTTGRFDAGLVSPQLRLAILTEADLTGQRGSLTK
DSSRMPSRRRNAIDPISLKSGDYVVHEQHGVGRYVEMVRRTINGGEREYLIIEYAPARKG
QPADRLFVPTDSLDQVTKYVGGEAPSLHRLGGSDWAKTKGRARKAVKEIAAELIRLYSAR
MATKGHAFAPDTPWQRELEDAFAYVETPDQLGAIDEVKADMEKELPMDRIICGDVGYGKT
EVAVRAAFKAVQDGKQVAVLVPTTLLAHQHLQTFSERMAQFPVKVRELSRFTSPSDTDAT
MAGIVDGSVDIVIGTHRLLQQTVRFKDLGLVIIDEEQRFGVEHKEYLKSLRTAVDVLTMS
ATPIPRTLEMSLTGIREMTTILTPPEERHPILTFVGAYDPRQISAAVRRELMRDGQVFYI
HNRVESINRAASKLAELVPEARIAVAHGQMGESALEQIMVGFWEKSYDVLVATTIVESGL
DIPNANTLIVDRADTFGLAQLHQLRGRVGRGRERGYAYFTYPPERPLTETAYDRLATIAQ
HTEMGAGMAVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVRLVGEAVADFRGEAQEEFT
DVKVDLPVDANLPVDYLPGERLRLEAYRALASATTDAAVDAVRAELIDRYGPVPPPVENL
LAVARFKNVCRGYGVTEVSLQGTSVRFTPLELPESAQIRLDRLYDKAHYKQAVSTVTVPR
PKGVVKPDGAFAETKFGGEALRDIALLTWCAQVLASVTGRPVAASA
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
gtggctctgtccggcctgctcaccactgctgccgccgacccggcgctcaccgtcgccgcc
gacgatgccggcgccccgtcgctcacgatcagcggcccgcccgcagttcagccgctcgtc
atcgccacgctcgcttcccgcgcgggacggccggtgctcgcggtcaccagcaccgagcgc
gaggccgaggagctgctcgccaccctgcgctgcctgctgccgccggatcaggtcgcgctc
tacccgggctgggagacgctgccgcacgagcgcctctcgccgcgcgcggacaccgtcggc
cagcggctggccgtgctgcggcggctgcgccacccgtccctgcacgacccggccgccgga
ccgcttgctgtggtggtggccccggttcgttccgtactgcaaccgcaggtgcccggtctc
ggcgagctgaccccggtcgagctgcgtcccggcgacagccgcgagctcaccgcgctggtc
accgacctcgtcggcgcgggctacacccgcgccgagctggtcgagaagcgcggcgacttc
gccgtccgcggcggcatcctcgacgtcttcccgcccaccgaggagcacccgctgcgagtg
gagttctggggcgacgacgtcgaggagatccgctacttcagggtcgtcgaccagcgctcg
ctggaagtcgcgccgcacgggctgtgggcgccgccgtgccgcgaactgctgctgaccgag
caggtgcagcagcgggccgccgacctgctcgccgagcacccgcagctgggcgaactgctc
gacccgatcagccgcggcgaggctgtcgagggcatggaggcgctggcgccggtgctcgtc
gagggcggacggctggagctggtgctgcacgagctgccggccggttcgcacgtgctcgtc
tgcgaccccgaacgggtgcgcgcccgggcggccgatctcgtccgcacgtcccaggagttc
ctcggcgcgtcctgggcggtggctgcagaaggcggcaagacgccgatcgaactcggcgcc
gcttcgttgcgcgagctcgaggacgtcgtcgccgaagcagcccggatcggcctgccgtgg
tgggcggtcaccgcgctcaccgccgacgcgagcatcggggcggacgtcgtcgccagcggc
ttcgagcaggcgccgacgttccgcggcgacaccgaggccgcgatgacccagctgcgcacc
tggacgcgcgagggctggcaggtcacgctcgtgttcgacgggcacggctcggcccagcgc
gccgtcgagcggctgtcagcggcggaggtcccggcgcggctgaccgacaccgtcaccgga
acgtccggggtggtcgaggtgacgaccggccgcttcgacgccggactcgtctcaccgcag
ctgcgcctggcgatcctcaccgaggccgatctcaccggccagcgcggctcgctcaccaag
gacagcagccggatgccgtcgcgacggcgcaacgcgatcgaccccatctcgctcaagtcc
ggcgactacgtggtgcacgagcagcacggcgtcggcaggtacgtcgagatggtccgccgc
accatcaacggcggcgagcgcgagtacctgatcatcgagtacgcgccggcgcgcaagggc
cagcccgcggaccggctgttcgtgcccaccgactcgctggaccaggtcaccaagtacgtc
ggcggcgaagcaccctcgctgcaccggctcggcggctcggactgggccaagaccaagggg
cgcgcgcgcaaggcggtcaaggagatcgcggccgagctgatccgcctgtacagcgcgcga
atggcgaccaagggccacgcgttcgccccggacacgccctggcagcgcgagctcgaggat
gcgttcgcctacgtcgagacgcccgaccagctcggtgctatcgacgaggtcaaggccgac
atggagaaggaactgccgatggaccgcatcatctgcggcgacgtcggctacggcaagacc
gaggtggcggtgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtcgccgtcctc
gtcccgaccacgctgctcgcgcaccagcacctgcagaccttctccgagcggatggcgcag
ttcccggtcaaggtccgcgagctgtcccggttcacctcgccgtccgacaccgacgccacc
atggccggcatagtcgacggctccgtcgacatcgtgatcggcacgcaccgcctgctgcag
cagaccgtccggttcaaggacctcgggctggtgatcatcgacgaggagcagcgcttcggc
gtcgagcacaaggagtacctgaagtcgctgcgcaccgcggtggacgtgctcaccatgtcc
gccacaccgatcccgcgcacgctggagatgtcgctgaccggcatccgcgagatgaccacg
atcctgaccccgccggaggagcggcacccgatcctgacgttcgtcggcgcatacgacccg
cggcagatctccgccgccgtgcgccgcgagctgatgcgcgacggccaggtgttctacatc
cacaaccgggtcgagtcgatcaaccgcgcagcgtccaagctggccgaactggtgcccgag
gcgcggatcgccgtggcgcacgggcagatgggcgaatcggcgctggaacagatcatggtg
gggttttgggagaagagctacgacgtgctggtcgccaccacgatcgtcgagtccgggctg
gacatccccaacgcgaacacgctcatcgtcgatcgcgccgacacgttcgggctggcccag
ctgcaccagctgcgcgggcgggtcggacgggggcgcgagcgcggctacgcctacttcacc
tacccgcccgagcgtccgctcaccgagaccgcctacgaccggctcgccaccatcgcccag
cacaccgagatgggcgccggcatggcggtggcgatgaaggacctggagatccgcggctcc
gggaacctgctcggcggcgagcagtccgggcacatcgccggcgtcggcttcgacctgtac
gtgcggctggtcggcgaggcggtggccgatttccgcggcgaggcgcaggaggagttcacc
gacgtcaaggtggacctgcccgtcgatgccaacctgcccgtcgactacctgccgggggag
cggctgcggctagaggcctaccgcgccctggcctcggccaccaccgatgcggcggtcgac
gcggtgcgcgccgagctgatcgaccgctacgggccggtgccgccgccggtcgagaacctg
ctcgcggtcgcccggttcaagaacgtgtgccgcggctacggcgtcaccgaggtctccctg
caggggacgtcggtgcgcttcaccccgctcgagttgcccgagtccgcgcagatccgcctc
gaccggctctacgacaaggcgcattacaagcaggccgtctcgacggtcaccgtcccgcgg
ccgaagggcgtcgtgaagccggacggcgccttcgccgagaccaagttcggcggcgaggcg
ttgcgtgatatcgcgctgctgacctggtgcgcgcaggtgctcgcgtccgtcaccggccgg
ccggtcgccgcgtccgcctga
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