Jeotgalibaca dankookensis: BW727_101483
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Entry
BW727_101483 CDS
T04733
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jda
Jeotgalibaca dankookensis
Pathway
jda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BW727_101483 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jda03400
]
BW727_101483 (mfd)
Enzymes [BR:
jda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BW727_101483 (mfd)
DNA repair and recombination proteins [BR:
jda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BW727_101483 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AQS53850
UniProt:
A0A1S6IQU1
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All DBs
Position
complement(1494490..1498017)
Genome browser
AA seq
1175 aa
AA seq
DB search
MRDIENYLQKTPAIKKIVEQVKNEGNQLVTGISSSSRNLLTSIIYRNTEHPIVVWAPNLL
IASQIYDDLTQISEDIPVFLFPVEESLAVELAFSSPEFRSQRVEAMHFLATGQKGIVIVP
SAGFKKLLSPVSIWKDHNLTFKEGETVTFETLPDKLVAMGYNRESMVAAPGEFSIRGDII
DIYALNEEEPVRIEFFDNEIDRMRFFEPTTQRSFDEVVTEVLVLPAQDSVYPANLLSKRS
DAISKMVKKASQSIKDEEVKERMQVHFNDLIEKLEVGEIPANPKMYTSLFYSEETTLLDY
IPKDALIIVDEYGRTLESDRNQEVEAADWQASKQYDGLLLPKQKMMADVRHIMKKSHHPK
VFYSLFQKGLGNIRFTDIHALQYRGIVQFFSQMDMVKIEMERWLRQGMTIFTIVADHERA
EKVHQTFADFHIESVIKGNDSVTPEHVNIVVGAMANGFEMPMEKVVFVTEKELFNKAQKR
QVRRQKISNAERIKSYSELSPGDYVVHVNHGIGKYTGMETIVVDGSHQDYISILYKDSAK
LFIPVTQLHLVQKYVSSESKTPKVNKLGGTEWTKTKNKVASRVEDIAEDLIALYAQREAE
EGYAFPPDTKEQIEFENQFPFTETEDQLRSAQEIKKDMEKSRPMDRLLVGDVGYGKTEVA
MRAVFKAVSEGKQAAFLVPTTILAQQHYETLIQRFEEWPFEIGLMSRFRTKKQQEKTIEG
LRKGSVDIVVGTHRILSKDVKFFDVGLLVVDEEQRFGVKHKEVLKQLKASVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNMGAVVDGIEREMARGGQTFYVYNR
VETIERKADEIRILVPGARVGVAHGQMTEVQLENIMMDFVEGNFDVLVTTTIIETGVDIP
NANTLFIENADFMGLSQLYQLRGRVGRTNRIAYAYMMYQPNKILSEVSEKRLKAVKDFTE
LGSGFKIAMRDLAIRGAGNLLGAQQHGFIDSVGFDLYSEMLREAVERKQGKGASRKLANV
EIDLNIDAYIPATYISDERQKIDMYKRIQQTASENDYYEIMDDFVDRFGETPVEVNQLAQ
IGLLRHVSQEAEVEAIKRQGENVLVTLNESGSTRLQGAAIFEALSSIPLRAKVITRKEKL
LVTLEIKKLATESWMDYLKVFLEACAIVEEKEDEK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgatattgagaattacttacaaaagacaccagcgataaagaaaatagttgagcaa
gtaaaaaacgagggtaatcaactcgtaactggtattagcagttcttcgcgtaatttatta
acgtcgattatttacagaaacactgaacatcctattgttgtctgggcgcctaatttgttg
atagcgagccaaatttatgatgatttaacgcaaatttctgaggatatacctgttttcctc
tttccggttgaagaatctttagcagttgaattagctttttcttctcctgaattccgtagc
caacgtgtagaagccatgcattttttggcaaccggacagaaagggattgttatcgttcca
agcgcaggatttaaaaaattactatcgcctgtttcaatttggaaagaccacaatctcact
tttaaagaaggagaaacagttaccttcgaaacgctaccggataagcttgtcgccatgggt
tacaatcgcgaatctatggtagcagctccaggtgaattcagtattcgtggggacattatt
gatatttatgcgctcaatgaagaagaaccggtccgaattgaattttttgataatgaaatt
gatcggatgcgtttctttgaaccgaccacacaaaggtcgtttgatgaggtagtgacagaa
gttcttgttcttcctgctcaagactctgtttatccagctaatctactctcaaaacgtagc
gacgcgattagtaagatggtaaaaaaagccagtcaatcgatcaaagacgaggaagttaaa
gagcggatgcaagtgcattttaatgaccttatcgaaaaactggaagtaggagaaattcct
gctaatcctaaaatgtatacctctttgttttactctgaagagacaaccttacttgattat
attcctaaagatgcgctgattattgtagatgaatatggtcgcaccttagaaagtgaccgt
aaccaagaagtagaagcagccgactggcaagccagtaagcagtatgatggcttacttcta
cccaaacaaaaaatgatggcggacgttcggcatataatgaaaaagagccatcaccctaaa
gtattttactctctcttccaaaaaggattaggaaatatccgatttacggatattcacgcc
cttcaataccgaggaattgtccaattctttagtcaaatggatatggttaagatagaaatg
gaacgttggctaagacaaggtatgactatcttcaccattgtggcggaccatgagcgggct
gaaaaagtacaccaaacctttgctgattttcatattgaaagcgtcattaaagggaacgat
tcggtcacgccggagcatgtaaacatcgtagtaggtgctatggcaaacgggtttgaaatg
cccatggaaaaagtcgtttttgtgactgaaaaggaattatttaacaaggcccaaaaaaga
caggttcgccgccaaaaaatatctaatgcggaacgtataaaaagttactcagaactgtca
ccaggtgactatgtcgtgcatgttaatcacggaataggtaaatataccggtatggaaaca
attgtggtggatggttcacaccaagattatatctctattttatacaaagacagtgccaag
ttgtttattccggttacgcaacttcatttggttcaaaaatatgtttcttctgagtccaaa
acacccaaagtaaataaattaggtggaacagaatggacaaaaacaaaaaataaagttgcg
tcgcgtgtagaagatatcgctgaggacttgattgccttatatgcccaacgtgaagcagaa
gaagggtatgcttttccaccggatacaaaagagcaaattgagtttgaaaatcagtttccc
tttacagaaacagaagatcagcttcgaagcgcccaagagatcaaaaaggatatggaaaaa
agtagaccgatggaccgtttattagttggtgatgttgggtatggtaagaccgaagtcgca
atgcgtgcggtttttaaagcagtaagcgaaggaaaacaagctgcctttttagtgcccact
acaattttagcgcagcagcactatgaaactttaatccaacgttttgaagagtggcctttt
gaaattggactgatgagtcgttttcgaaccaagaaacaacaagaaaaaacgatagaagga
ttgcgcaaaggcagtgtagatatagttgtcggaacacatcggattttatcgaaagacgta
aagttttttgatgtcgggcttttagttgtggatgaagagcaacgatttggagttaaacac
aaagaagtattgaagcaacttaaagcatcagtagatgtattgactttaacagctactccg
attccgcgaaccttacatatgtctatgttaggggtacgtgatttatcagtcattgaaaca
ccaccagctaaccgctatcccgtccaaacttatgtcatggaacaaaatatgggagcagtt
gtggacggcatagaacgtgaaatggctcgtggcggtcaaactttttatgtctataatcgc
gttgagacgattgaacgaaaggctgatgaaattcgtattctagtgccgggtgcacgggtc
ggtgtggcacatggacaaatgaccgaagtacaattagaaaacatcatgatggattttgta
gagggtaattttgatgttttagttaccacgacaattattgaaactggggttgatatcccc
aatgcgaatacactctttattgaaaatgccgattttatggggctttcacaactttatcag
ttacgaggacgtgtcggtagaaccaatcggattgcttatgcctatatgatgtatcaacct
aacaaaattttaagtgaagtgagtgaaaaaagattaaaagcggtaaaagattttacagag
ctaggttcgggctttaaaattgccatgcgtgacttggctattcgtggagctgggaatctt
ttaggcgcacaacaacacggctttatcgattctgttggatttgacctttattcagaaatg
ttgcgtgaagcagtagaacgtaaacaaggtaagggcgcaagtagaaaactggcaaatgtt
gagattgacttaaatattgatgcgtatattcccgcaacctatatctccgatgaaagacaa
aaaattgatatgtataagcgcattcaacaaacagcaagtgaaaatgattattatgaaatt
atggatgactttgttgaccgctttggtgaaacaccggttgaagttaatcaactggctcag
atagggttgctcagacacgtttcacaagaggcagaagttgaagcgattaaacgacaagga
gagaatgtcttggtgacattgaatgaatcaggtagtactcgtctacaaggcgcagctata
tttgaagcattgagtagtatccccttgcgtgcaaaagttatcactcgcaaagagaagcta
cttgttaccttagaaataaaaaaactagcaaccgaatcatggatggattatctgaaggtg
tttcttgaagcgtgtgcgattgtagaggaaaaagaggatgaaaaataa
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