Jeotgalibaca dankookensis: BW727_101682
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Entry
BW727_101682 CDS
T04733
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jda
Jeotgalibaca dankookensis
Pathway
jda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW727_101682 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jda03019
]
BW727_101682 (cshA)
03009 Ribosome biogenesis [BR:
jda03009
]
BW727_101682 (cshA)
Enzymes [BR:
jda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BW727_101682 (cshA)
Messenger RNA biogenesis [BR:
jda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BW727_101682 (cshA)
Ribosome biogenesis [BR:
jda03009
]
Prokaryotic type
rRNA helicases
BW727_101682 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AQS54047
UniProt:
A0A1S6IR71
LinkDB
All DBs
Position
complement(1710885..1712447)
Genome browser
AA seq
520 aa
AA seq
DB search
MKFSELGLSPELLKSIEAMGFEETTPIQEQTIPLGLKGLDVIGQAQTGTGKTAAFGLPML
EKIDRNKRAIQGLVIAPTRELAIQTQEELYRLGREKRVSVQVVYGGADIGRQIRSLKNNP
HIVVGTPGRLLDLIRRKSLKLNNVETLVLDEGDEMLNMGFLEDIEAIISETPADTRQTLL
FSATMPPAIKRIGVKFMKSPEHVQIKASEMQANLIDQYFVKCKDFEKFDNMTRLFDVQNP
ELTIIFGRTKRRVDELANGLELRGYRAEGIHGDLTQKKRMSVLKDFKTGNLDILVATDVA
ARGLDITGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFVTPNEMGYLRTIEKLTG
KAISPLRPPSDEEALVGQLKNAIDSIDTLVKETESEKYDRAIKHLMDKYTTEELASALIK
SQTKEATEVPVTITPERPLPSRGGGKKGGSGYRGKSGGYKGKSGGSRSGDRRQSGDRNNK
GRSFSKDRDSRPSSGGKRRDDRKGSSKGSGKPSFKIRSND
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagaactgggattatctcccgaactacttaaatcaatcgaagctatgggg
tttgaagaaactaccccaatccaagagcaaactatacctttaggattaaaggggttagac
gttattggacaagcacaaacaggtacaggaaagacagcagcgtttggattacccatgcta
gaaaaaattgatcgcaataaacgcgcgattcaaggactagtcattgcaccaacacgtgag
ttagcgattcaaactcaagaagaattgtaccgcttaggtcgcgaaaaacgcgtatccgta
caagttgtttatggtggcgcagatattggccgtcaaatccgctccttgaaaaacaatcca
catatcgttgttggaacacccggacgtctgttagacctaatccgtcgtaaatccttaaaa
ttgaacaatgttgaaacacttgttttagatgaaggtgacgaaatgctgaacatgggcttc
ttggaagacatcgaagcaattatttccgaaacgccagcagatacacgtcaaacactcttg
ttctcagcaacaatgccgccagcaattaaacgtattggtgtaaaattcatgaaatcacca
gaacacgttcaaattaaagcgtcagaaatgcaagcaaacctgattgatcaatattttgtg
aaatgtaaagatttcgaaaaatttgataacatgactcgtttgttcgatgttcaaaaccca
gaattaaccattatcttcggacgtacaaaacgccgtgttgatgaattagcgaatggtcta
gaacttcgtggttaccgtgctgaaggtatccatggtgacttaactcagaaaaaacgtatg
agtgttctaaaagactttaaaacaggtaatttagatattctagttgcgacagacgttgca
gcacgtggtctagatataacaggtgtaacacacgtttataactatgatattccacaagat
cctgaaagttatgttcaccgtatcggccgtactggtcgtgctggtaaagaaggtatgtcc
gttacatttgtaacaccaaatgaaatgggctacctacgcacaatcgaaaaactaaccgga
aaagcaatctcaccattgcgtccaccttcagatgaagaagcgttagttggtcaactgaaa
aatgcaattgattcaattgatacgcttgttaaagaaactgaatcagaaaagtatgatcgt
gcaattaaacaccttatggataaatacacaacagaagaactggcttcggcacttattaaa
agccaaacaaaagaagcgactgaagttcctgttacgattacaccagaacgtccattacca
agccgtggtggcggtaaaaaaggtggcagcggctaccgtggtaagagtggcggatacaaa
ggaaaaagtggcggaagccgttcaggcgatcgtcgtcaatccggagaccgcaacaacaaa
ggccgttcatttagcaaagaccgtgacagccgtccatctagtggtggcaagcgtcgtgat
gaccgtaaaggatcatcaaaaggtagcggtaaaccaagttttaaaataagaagtaacgac
taa
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