Jonesia denitrificans: Jden_0581
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Entry
Jden_0581 CDS
T00972
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jde
Jonesia denitrificans
Pathway
jde03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Jden_0581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jde03021
]
Jden_0581
03400 DNA repair and recombination proteins [BR:
jde03400
]
Jden_0581
Enzymes [BR:
jde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Jden_0581
Transcription machinery [BR:
jde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Jden_0581
DNA repair and recombination proteins [BR:
jde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Jden_0581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ACV08245
UniProt:
C7R0T8
LinkDB
All DBs
Position
630466..634338
Genome browser
AA seq
1290 aa
AA seq
DB search
MLDVTEFDELRIGLATAEDIRHWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMVTSVDEDARHEDLPNLQNEIDLERKEIEDRRDNDINKRAEKLEAD
LAELEAEGARADQRRKVRDAAEREMAQLRKRADQELERLDLVWDKFKNLKVSDLEGDELI
FRELQDRYGTYFEASMGAAAIQKRLENFDLEAEAESLREIIRSGKGQKKTRALKRLKVIN
AFLTTTNKPSAMVLDVVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLFHLTAEREDPKGAGR
AFSHVSEAIMAFDSGELDLNAPIKVRMDGFVPPRKGWTAPDGWAQGDPTVVETTLGRALF
NELLPVDYPYVNTVVDKKKLSQIVNELAENYPKVEVAESLDALKEAGFRWATRSGVSIAI
SDVATPTAKAEILTDHEAKALKIQQQYDKGLITDDERRQELIEIWTQATDKVAKAMQDNF
QARNTVFRMVGSGARGNWMQVRQIAGMRGLVANPKGDIIPRPIKANYREGLSVLEYFIAT
HGARKGLADTALRTADSGYLTRRLVDVSQDVIVRELDCGTERGLSLPVGEDIGDGTLVRH
EKVEQSIYTRTLAQDVEVDGVVIGRAGDDVGDRLIDQLVAGGVHNLKVRSVLTCESRVGT
CAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVT
ELFEARTPKGEAPIAEYSGSIRIEDGDRSRQIILTPEDDSEEISYQVSKRARLLVADGDR
VAVGTQLVQGAVDPKKVLRILGPRAAQKHLVDEVQEVYRSQGVDIHDKHIEVIVRQMLRR
VTILDSGTTDLLPGELAERARFEDANREALSTTGTPASGRPELMGITKASLATDSWLSAA
SFQETTRVLTEAAMSGRRDPLLGLKENVILGKLIPAGTGLPRYRNVDVEPTEEAKSELYP
NFGYDEIDFSGSGFGGDTISLDDIEFPDFR
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcactgaattcgacgagctgcgtatcggactcgccacagctgaggacatt
cgtcactggtcttacggcgaagtaaagaaacccgaaacgatcaactaccgtaccctcaag
ccggagaaggatggtctcttctgcgagaagatcttcggccccacacgtgactgggaatgc
tactgcggcaaatacaagcgtgtgcgattcaaaggcatcatctgtgaacgctgcggtgtg
gaagtcacgcgttccaaagtccgtcgtgaacggatgggccacatcgagttggctgcgcct
gttacccacatttggttcttcaagggtgtcccatcgcggctcggctatctcctcgattta
gctccaaaagaccttgaaaaggtcatctacttcgcggcgtacatggtcacatccgttgac
gaagatgctcgtcatgaggatctgcccaacctgcaaaacgaaatcgatctggaacgtaaa
gagatcgaagaccgccgtgacaacgacattaacaagcgggcagagaagcttgaagctgac
ctcgccgaacttgaagctgaaggcgcccgggctgatcagcgccgtaaagtacgtgatgca
gctgaacgagaaatggctcagcttcgtaaacgtgcggatcaagaactcgaacgcctcgac
cttgtgtgggacaagttcaagaacttgaaggtgtccgaccttgagggtgacgaactgatc
ttccgcgaacttcaagatcgttacggaacctacttcgaggcatcgatgggtgctgcggca
atccagaaacgtctcgagaactttgacctggaagcagaagccgaatcgcttcgtgagatc
atccgctcaggcaagggccaaaagaaaacgcgcgccctcaagcgtttgaaggtcatcaac
gcgttcttgaccaccacgaacaaaccatctgccatggtcttggacgtagttccggtcatc
ccaccagacttgcgtcccatggtgcaactcgacggtggccgttttgcgacctctgacctg
aacgacttgtaccgccgtgtgatcaaccggaacaaccgtctcaagcgtttgctcgacctt
ggtgccccagagatcatcgtgaacaacgagaagcggatgctgcaagaagcagtagattcg
ctcttcgacaacggacgccgtggccgaccagtgaccggacccggaaaccgacccctgaag
tctatttcggacatgctgaagggtaagcaggggcgtttccgtcaaaacctgctcggaaag
cgcgtggactactccggtcgttccgtgattgtggttggccccaccttgaaactgcaccag
tgcggtttgccgaaacaaatggcacttgagctgttcaagccatttgtcatgaagcgtctg
gttgacctcaaccacgcgcagaacattaagtccgccaaacgtatggtggaacgcgggcgt
tctgtcgtgtgggatgtcctcgaagaggtcattaccgaacacccagtactgctgaaccgt
gcaccgacgcttcaccgtttgggtattcaagcgttcgagccacaactcgttgaaggaaag
gcaatccacctgcacccacttgtgtgtgctgcgttcaacgccgacttcgacggtgaccag
atggctgtgcacctcccgctatcagctgaagcgcaggccgaagcgcgcattctcatgttg
tcgtccaacaacatcttgaagccgtctgacggtcgccccgtgaccatgccatcacaggac
atgatcattggtctgttccacttgaccgcggaacgcgaagaccccaagggagcgggacgc
gctttctcccatgtctctgaagcgatcatggcatttgactcaggtgaacttgacctcaac
gctccgattaaggtgcgtatggacgggttcgttccaccacgcaaggggtggactgctcca
gatggatgggcgcaaggcgatccaactgttgtcgaaacgacgctgggacgggcgctgttc
aacgaactgcttcctgtggactacccctatgtcaatacagttgtcgacaaaaagaagctg
tcacagatcgtcaacgaactcgctgagaactacccgaaggtagaagttgctgagtctctt
gacgcactcaaggaagccggcttccgctgggcaacccgctctggtgtgtcgatcgcgatc
tccgacgtcgcaacgcccacagcgaaagctgagatcctcacggatcacgaggcgaaagcg
ctgaagatccagcagcagtacgacaagggtctgatcactgacgacgagcgtcgacaggaa
ctgatcgagatttggacccaagcaacggacaaggttgctaaggccatgcaggacaacttc
caagcccggaacacagtgttccggatggtggggtccggtgctcgtggtaactggatgcag
gtacgtcagatcgctggtatgcgtggtcttgtggcaaacccgaagggtgacatcatcccg
cgtccgatcaaggcaaactaccgtgaagggctctccgttcttgagtacttcatcgcgact
cacggtgcacgtaagggtctcgcagacaccgcgttgcgtaccgctgactccggttacttg
acccgtcgtctcgttgacgtctcccaggatgtcatcgtgcgtgagcttgactgtggtacc
gaacgaggactgtctttgccagttggcgaggacatcggcgacggaacactggtccgccac
gaaaaggttgagcagtcaatctacacccgtaccctcgcgcaagacgttgaggtcgacgga
gtcgtgattggtcgcgccggagatgacgttggtgaccgcctgatcgatcagctggttgcc
ggtggtgtgcacaacctcaaggtacgttcggtgttgacctgtgagtcacgcgtgggaacc
tgcgcgaagtgctatggccgctccttggctaccggaaagctggtagacattggtgaagct
gtcggtattatcgctgctcagtccatcggtgaaccaggtacacagctcacaatgcgtacc
ttccacactggtggtgttgcatccgcagatgacattacgcaaggtctgcctcgcgtgact
gaactctttgaagcccgaaccccgaagggtgaggcgccgatcgctgagtactccggttcg
attcgcatcgaagatggtgaccgtagccgccaaatcatcctcacccctgaggatgattcg
gaagagatcagctaccaagtctccaagcgtgcacgccttttagtggcagatggtgaccgg
gttgctgtgggaacgcagcttgtacagggtgcagtcgacccgaagaaggtccttcgtatc
cttggtccccgggcagcgcagaaacacctcgtggacgaagttcaggaagtgtaccgttct
cagggtgtggatattcacgacaagcacatcgaggtcatcgtgcgtcagatgctgcgtcgt
gtcaccatccttgattcagggacgacggatcttctgccaggggaactcgcagagcgtgcc
cgttttgaagatgcgaaccgtgaggctctctccacaacagggaccccggcatcgggacgt
ccagagttgatggggatcaccaaggcatcgttggcgaccgattcgtggttgtccgcggcg
tcgttccaggagaccactcgagtgctcacggaggctgcaatgtccggccgccgcgaccca
cttcttgggctcaaggaaaacgtcatcctcggtaagctcattccagcagggacggggcta
cctcgttaccgcaacgtggatgtcgaacccacagaggaagcgaagtccgagttgtacccg
aacttcggttacgacgagatcgacttctctggctctggcttcggtggagacacaatctcc
ctcgacgacatcgaattccctgacttccgttag
DBGET
integrated database retrieval system
