Jonesia denitrificans: Jden_0712
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Entry
Jden_0712 CDS
T00972
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
jde
Jonesia denitrificans
Pathway
jde03420
Nucleotide excision repair
jde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Jden_0712
03430 Mismatch repair
Jden_0712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jde03400
]
Jden_0712
Enzymes [BR:
jde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Jden_0712
DNA repair and recombination proteins [BR:
jde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Jden_0712
MMR (mismatch excision repair)
Other MMR factors
Jden_0712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
PhoH
Motif
Other DBs
NCBI-ProteinID:
ACV08376
UniProt:
C7R1Q8
LinkDB
All DBs
Position
770596..773907
Genome browser
AA seq
1103 aa
AA seq
DB search
MTRLPLSARDIAQLLDLPHPTVEQQAIIEAPLESMLVIAGAGSGKTETMSARVVWLIANQ
IIAPERVLGLTFTRKAAGELTERIRARLAHLDRVAPGLTSRRIDTNNDRHTTADTPPALS
ALARPTISTYNSYAASLVTEHGLRIGREPGARLLTEASIWAMVSDIVDHWQEDLDTDYAV
STMTDAVVTLAGELADHLLTVPEAATQLDHLLESLADLPLAGRSLAPSVAKLGKQLATKR
RLLDLVSEYHRVKRHSESMDFSDQVVLAAELARDHPFVADTERRRFAVVLLDEYQDTSYA
QIQLLTALFGDGHPVTAVGDPNQSIYGWRGASASGLTRFPRDFPRPNGTPASIASLSTSW
RNDAQILSAAHRIALPLASASALPLPTLSTRPGAGTGSVTVGYYLSAQDEAQGIADFFTR
HFVPGMTTAAVLCRARKQFPLLEETLRNAGLPVEVVGLGGLLHTPEIRDLVSMLEVVHDP
SRGDSLMRLLTGPRFHLGAHDIHTLGVWARELSSRAHGYSGPPRGALREAADERSIVDAL
AQLPPRSWQGHHGETFSEAGYERLTQLSALIDALRQQTYLALPEFVDATERALGLDVEVA
LRAAHRHAETGTTDPSDPWGRAHLDAFRSVVTDFVHQAVHPTLGALLAWLDDARDRERGL
DRPTGHLDPHAIHLITVHAAKGLEWDLVAVPALSDGVFPSTATTTPRGPTDSGWTSHLGA
LPFSLRGDAPDLPHLSLADADHDAEIARRLTEFTAQCGHYQVAEERRLAYVAYTRARTAL
LVTGAWWRTGKTATPPSPFLTELLDIDGVQIADLVTEPGDDNPHPPDGDTAVWPQSLVDD
ITKRAADLVMSTRHNGRPILDHIGPVQVHGVDLAQRARQVLNVQQRPRGSSVIFPDHVSV
SGLVELSADREGFLTQYQRPIPRQPSPQSRRGTTFHLWVEQFYGHTPLFDMDDLDNTSDS
DDHGTDRTLDELKATFEQSRWARLTPKELEADIDVVIAGVVIRARIDAVFDDPDRPGGVI
VVDWKTGRAPTTDADQRHRNVQLAVYRLAWATWSGCDINDVTAAFYYVAQDLTVIPDQLP
EREELERLVRHAGNIQGVGPQDH
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcttacctctcagcgcccgagatattgcacaattgctggatctgcctcacccc
actgtggaacaacaagcaatcattgaagctccccttgagtccatgcttgtgattgcaggg
gcggggtcggggaaaacggaaaccatgtcagcccgggttgtctggctgattgccaatcag
atcattgctccagaacgagtcctcgggttgacgttcactcgtaaggcggccggagaactg
actgaacgcatccgtgcccgtctggcccaccttgaccgtgtcgcccctgggcttacttcc
cggcgcatcgacaccaacaacgacagacacaccactgctgacaccccaccagcattgagc
gccctggcgcgtcccacgatctccacctacaactcctatgctgcctcactggtcaccgaa
cacgggttacgcatcggcagggaacccggcgcccgcctcctgaccgaagcgagcatctgg
gcgatggtgtcagacattgttgaccactggcaagaagaccttgacacggactacgccgtg
tcaacaatgaccgatgcggtggttaccctcgcgggagaactcgccgatcatctcctcaca
gtgcccgaggccgcaacccaactcgatcacctactggagagcctcgcagacctcccctta
gctgggcgaagcctcgccccctccgttgccaagcttgggaagcaactcgccacgaaacgg
cgcctactcgacttagtctcggagtatcaccgggtcaaacgtcactcagagtccatggat
ttctcagaccaagtggttctggctgctgaacttgctcgtgaccatccgtttgtcgccgac
acagaacgacgacgtttcgctgtcgtattacttgacgaataccaagacacctcgtacgca
caaatccagctcctcaccgcactctttggtgatgggcacccggtcactgcagtgggggac
ccgaaccaatcaatctatgggtggcgcggagccagcgcctcagggctcaccaggttccct
cgcgactttccccgccccaacggcacccctgcatcgatcgcttccctgtccacctcgtgg
cgcaacgatgcacagatcctgtcggcggctcaccggatcgcgctgcctcttgcgagcgcc
tccgccctgcccctacccacgttgtctactcgacctggtgctgggacaggaagcgtcacc
gtggggtactacctgtcagcacaagacgaagcacaaggcattgccgatttcttcactcgc
cacttcgttccagggatgaccactgctgcagtgttgtgtcgagcacgaaaacagtttccc
ctccttgaagaaactctgcggaacgcaggcctccccgttgaagtggtgggtttgggtggg
ctcctgcacaccccagaaatccgtgacctcgtcagtatgcttgaggtagtccacgaccca
tccagaggagattccctgatgcggttactgactggaccacgcttccacctgggggcacac
gacatccacaccctcggtgtgtgggcacgcgaactgagttcccgggctcacggttacagc
ggccccccgcgcggagcattacgtgaagcagctgacgaacgatccatcgtggacgcactc
gcacaactgcccccacgctcgtggcaggggcaccatggcgaaacattcagcgaagcaggg
tatgagcggctgactcaactctccgcactgatcgatgcactgcgccagcaaacctatctg
gcattgcccgagtttgtggacgcaaccgagcgagcattggggcttgacgttgaggtggcg
ctacgggcagcgcatcgacacgcggaaacagggaccacggatccgtcggacccgtggggt
cgcgcgcaccttgacgctttccgttccgtggtgacagattttgttcaccaagcggtgcac
cccacattgggtgcactactcgcatggcttgacgatgcccgtgaccgagaacgtggactg
gaccggccaacaggacacctcgacccgcacgcgattcacctcattacggtgcacgcagca
aaagggttggaatgggaccttgtggctgtcccagcgctcagcgacggtgttttcccctcc
accgcgacgaccacgccgcgaggccccacagattctgggtggaccagtcacctgggtgcg
ttgccattttcccttcggggagatgcccctgatcttccccatctctccctcgctgatgct
gaccatgatgcggaaattgcgcgtcgactcaccgagttcacggcgcagtgcgggcactac
caggttgctgaagaacgacgtcttgcctatgtggcgtacacccgtgcgcgcactgcactg
ctcgtcacaggtgcctggtggcgcaccgggaaaaccgcgaccccaccctcaccattcctc
accgaactccttgacattgacggggttcagattgcagacctcgtgaccgaaccaggagac
gacaacccgcacccacctgacggtgacacagcagtatggccacaatcgctggttgacgac
atcaccaagcgtgctgctgaccttgtcatgagtacacgccacaacggcagaccgatactt
gaccacatcggcccggtacaggtccacggagttgacctcgcgcagcgagcgcgacaggtc
ttgaacgtccagcagcgcccgcgaggctcatcagtgatattccccgaccacgtcagcgtc
tccgggttggtggaactttccgccgaccgcgaaggtttcctcacccaataccagcgcccc
attcctcgccaaccgtcgccgcaatcacgacggggaacaaccttccacctctgggtggaa
cagttttatgggcacaccccgctgttcgacatggatgacctcgataacaccagcgacagc
gacgaccatggtacggaccgcacacttgacgaactgaaagcgacatttgaacagtcacgg
tgggcacggctcacacccaaggaactcgaagcagacatcgacgttgtcatagctggagtg
gttattcgagctcgaatagacgctgtctttgatgaccctgaccgccctggcggtgtcatc
gtcgtggactggaaaacagggcgtgcccccacaaccgatgccgaccagcgtcaccgtaac
gtacaactggcggtctaccgtcttgcgtgggcaacatggtcagggtgtgacatcaacgat
gtgacagcagcgttctactacgtggcgcaggacctcacagtgatcccagaccaacttcca
gaaagagaggaactcgaacgtcttgtgcgtcatgccggaaacatccagggtgttggcccc
caggatcactga
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