Jonesia denitrificans: Jden_1226
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Entry
Jden_1226 CDS
T00972
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
jde
Jonesia denitrificans
Pathway
jde03030
DNA replication
jde03410
Base excision repair
jde03420
Nucleotide excision repair
jde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Jden_1226
03410 Base excision repair
Jden_1226
03420 Nucleotide excision repair
Jden_1226
03440 Homologous recombination
Jden_1226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jde03032
]
Jden_1226
03400 DNA repair and recombination proteins [BR:
jde03400
]
Jden_1226
Enzymes [BR:
jde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Jden_1226
DNA replication proteins [BR:
jde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Jden_1226
DNA repair and recombination proteins [BR:
jde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Jden_1226
NER (nucleotide excision repair)
GGR (global genome repair) factors
Jden_1226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACV08882
UniProt:
C7R425
LinkDB
All DBs
Position
1308406..1311087
Genome browser
AA seq
893 aa
AA seq
DB search
MRPRLLIIDGHSMAFRAFFALPADKFMTSGGAYTNAVHGFISMLATLIKNEQPTHVGVAF
DAGAHTFRTEVFPQYKGTRDATPEPFKGQVALIKEVLDAMNIRYLEKDRFEADDILATWS
TCAAEAGMEVLLCSGDRDTLQLVNDHVTVLYPVKGVSELKRYTPEAVEEKYGVRPEQYPD
LAALVGETSDNIPGVPGVGPKTAAKWVNQFGSLTEVLNSAETIKGKVGEKLRDHLDQVRQ
NREINRLLTDVDLDVMPNDLTVQQWDRNKLHEIFDMLEFRTLRERLLAMMGAVDQGTHDE
GGAAQGASTQIMEVAAGELAQWLSSTRQPMGLAVAGKGVPSRGTAWQIALSATPESAVVV
TLDELSDADSVALRQWLMDPHYPKIVHSAKEAWHALHSFSGGVKGVIADTELAAYLAFPD
QRSYGLEDLSIRYVSRDITPVAHQAQGSLDLGLDDTDDALRALANRAAVLPQLAQALDAE
LSDRSLTALYQEMELPLTVVLAQMEHVGVAVDLEQLRSLDAFFAHQGSEAQKAAFEAIGR
QVNLGSPKQLQEVLFDQLDMPKTKKIKTGYTTDAASLADLFVKTGHPFLQHLLEYRDSTK
LRQTVEGLLKSVADDGRVHTTFQQTVAATGRLSSTDPNLQNIPIRTETGRRIRQGFVVGE
GLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGARVFGVSIDEVTPQMRSK
VKAMSYGLAYGLSAFGLSKQLNISVGEASTLMDDYFTRFGGVRDYLTSVVARARTTGYTE
TIMGRRRYLPDLTSDNRQRRENAERVALNAPIQGSAADVIKQAMLGVDAAFRSEGLSSRL
LLQIHDELIVEVAPGEQEIAERIVREEMAGAMQLSVPLAVSVGTGQNWHDAGH
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
gtgcgacccagactgctcatcatcgacggacactccatggcttttcgcgcgtttttcgcg
ctcccggccgataaatttatgacgtcgggaggtgcctacaccaacgccgtccacgggttt
atttccatgttggccacactcatcaaaaatgaacagcccacccacgttggtgtcgccttc
gatgcgggagctcacacattccgcactgaggtgttcccacagtacaaaggaaccagagac
gcaactcccgagccgttcaaaggtcaggtcgcactgatcaaagaagttcttgacgcgatg
aacattcgctacctggaaaaagaccgattcgaagctgacgatattcttgctacttggtcc
acctgcgcggcagaagccggtatggaggtcctgctgtgttcaggtgaccgtgacaccctc
caactcgttaacgatcatgtcactgtgttataccccgtcaaaggcgtgtcagaactcaag
cgctacacaccagaggcggtcgaagaaaaatatggtgttcgccccgaacaatacccagac
cttgcagccctcgttggtgaaacctcagacaacattcctggggtcccaggagtaggtccc
aagaccgccgcgaagtgggtcaaccagtttggcagcctgaccgaagtgctgaactcagcc
gagaccattaagggaaaagtgggggaaaagcttcgcgaccacctcgaccaagtgcgccaa
aaccgtgaaatcaaccgtctcctgacagacgttgacctcgacgtcatgcccaatgatctc
accgtccaacaatgggaccggaataagcttcacgaaatctttgacatgctggagttccgc
accttacgcgaacgcctgcttgccatgatgggggcagtcgaccagggaacgcacgatgaa
ggcggtgcagcgcagggcgcttcgacgcagatcatggaggtggccgcgggggagttggca
caatggctgagctcaacacgacaaccgatgggtctggctgtcgcaggaaaaggcgttcca
tcacgcgggaccgcatggcagatcgcgctcagcgcgacaccagagtccgccgtcgttgtt
accctcgatgagttaagtgacgctgatagcgtcgccctacgccagtggctcatggaccct
cactaccccaagatcgtccacagcgcgaaagaggcatggcacgcgctccacagcttcagc
ggcggtgttaaaggtgtgatcgcagacactgaacttgccgcctacctggcgtttcctgac
caacgttcctacgggctcgaagacctctccatccgctacgtgtcacgtgacatcacccct
gtggcacaccaagcacaaggatcactggaccttggtttggatgacacagacgatgcgctg
cgagcgctggctaaccgtgcggcggtattgcctcagctagctcaggcgttggatgctgaa
ttgtcggatcgttcgttgactgcgttgtaccaagagatggaattgcctcttactgtggtt
cttgctcagatggaacacgtgggtgtggctgttgacctggagcagcttcgctctttggat
gctttctttgctcaccaaggaagcgaggctcaaaaagcggcgtttgaggcgattggtcga
caggtgaatcttgggtcgcctaagcaactgcaggaggtgttgtttgaccagcttgacatg
ccgaagacgaagaagattaaaactggttacaccactgatgcggcatcacttgctgacttg
ttcgtgaaaactgggcacccgtttttgcagcatctgctggagtatcgtgactcgacgaag
ttgcggcaaacagttgaggggttgttgaagtccgttgcagatgatggtcgtgtgcacacc
acctttcagcaaacggtggctgccactggtcggctgtcgtccacagaccctaatttgcaa
aacatcccgatccgtactgaaacaggtcggcgtatccggcaaggttttgttgtcggtgag
gggttggacactcttttaactgcggactattcgcaaattgagatgcggatcatggctcac
ctctctcaagatgacgggctgattagtgctttccaagcaggtgaggacctccacaatttt
gtgggtgcccgggtttttggtgtgtcgatcgatgaggtgacccctcagatgcgttccaag
gtaaaagccatgagttatgggctcgcctatgggttgtctgcctttggtttgtcgaaacag
ctcaacatcagtgtgggggaggcctccacactgatggatgactacttcacccggtttggt
ggggtgcgtgattacctcacctcagttgttgcccgtgcacgaacaacgggatacaccgag
acgatcatgggcaggcgccgttatctgccagatctcaccagtgataaccggcagcgccga
gaaaacgcggagcgtgttgcgttgaatgctcctattcaaggcagtgctgcagatgtgatt
aagcaagcaatgttgggggtagatgctgctttcaggagtgaagggctttcctcacgtctt
ctgcttcagatacacgacgaactgattgtggaagtggctcccggagagcaagaaatcgct
gagcgcattgtccgggaagagatggctggagcgatgcagttgtccgtcccgttggcggtg
tctgttggcactgggcaaaactggcatgacgcggggcactag
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