Jonesia denitrificans: Jden_1251
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Entry
Jden_1251 CDS
T00972
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
jde
Jonesia denitrificans
Pathway
jde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Jden_1251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jde03400
]
Jden_1251
DNA repair and recombination proteins [BR:
jde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Jden_1251
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Jden_1251
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_21
AAA_16
RsgA_GTPase
AAA_23
nSTAND1
AAA_25
NACHT
DnaJ_CXXCXGXG
Viral_helicase1
cobW
ScfRs
Septin
DUF463
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ACV08907
UniProt:
C7R450
LinkDB
All DBs
Position
1338754..1341669
Genome browser
AA seq
971 aa
AA seq
DB search
MTDRLIVQGAREHNLRSVDISLPRDQLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIYDYLRLLFSRAGTQH
CPVCGERITAQTPQQIVDKLLELPEKTRFQVLAPVVRGRKGEYHELLADLQAKGFSRVRI
DGELHQLASPPTLEKNIKHSIDVVVDRLALRDGIRQRLTDSIETALNTADGRVIIDMVDL
AENDPHRERRFSEKRACPNDHQLTLDEIEPRTFSFNAPYGACPECTGIGMRLEVDPELII
PDDDKSIADGAIAPWSATSSEYYDRILTGLSDELGFSLDTPWKKLPGSIQDAILYGKDYQ
VHVKYRNRWGRERAYTTGFEGVIASIERRHSETESEWSKEKYEAYMREIACPTCRGARLK
PEVLAVKVGGKSIAEVCELSMRDCQQFLNTIELGTREKQIAAAVLKEILDRLGFLLDVGL
DYLTLARAAGTLSGGEAQRIRLATQIGAGLVGVLYVLDEPSIGLHQRDNRRLIDTLTRLR
DLGNTLIVVEHDEDTIRASDWVVDIGPGAGEHGGEVVHSGTYHDLLTNDRSITGAYLSGR
RAIALPSARRAINPSRSLTVIGAKENNLRGDNVTFPLGVLTAVTGVSGSGKSTLVNSILY
TVLANKLNGARLVAGRHRRIDGLENLDKVVHVDQGPIGRTPRSNPATYTGVWDHVRKLFA
GTTEAKVRGYGPGRFSFNVKGGRCEACSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETL
EVTFKGKTVQDVLDMPIEEASNFFSAVPAIARHLNTLVDVGLGYVRLGQPAPTLSGGEAQ
RVKLAAELQKRSTGRTIYVLDEPTTGLHFEDIRKLLSVLQGLVDKGNSVIVIEHNLDVIK
NADWIIDMGPEGGSGGGLVVAEGTPEQVAQVSESHTGYFLKEILNAHPAVPLGDQVPDIA
PPTPRATKKKR
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatcgactcatcgtccaaggtgcccgcgaacacaacctccgatccgtagatatt
tcgctgccgcgtgaccaactcatcgtctttaccggcctgtcgggctccggaaagtcgtct
ttggcatttgacaccatcttcgcagaaggtcaacggcgatacgtcgaatccttgtctgct
tatgcccggcagttccttggtcaaatggacaaacctgacgtcgacttcatcgaagggtta
tccccagcggtctctatcgaccaaaaatccacaaataggaatccgcggtcaacagtcgga
acgatcacagagatctatgactacttacgtctgctgttttcacgagctggaacgcagcat
tgcccggtgtgcggggaacgcatcacagcccaaaccccgcaacaaatcgtcgacaagctt
cttgaacttcctgaaaaaacccgctttcaggtgctcgcacctgtcgtgcgtgggaggaaa
ggggagtaccacgaactcctcgccgatctgcaagccaaagggttctcccgggtccgcatc
gacggggaactacaccaactcgcaagcccgcccacgctcgaaaagaacatcaaacacagt
attgatgttgtggttgaccgattagcactgcgggacggaatccggcaacggctcactgac
tccatcgaaaccgcactcaacacagcagatggacgtgtcatcatcgacatggtcgatctt
gcggagaacgacccacaccgtgaacggcggttctccgagaaacgggcctgccccaacgat
caccaactgacgcttgatgaaatcgaaccccggactttctcatttaacgcgccctatggt
gcctgccccgaatgcaccgggatcgggatgcgacttgaagttgaccctgaactcatcatc
cccgatgatgacaaatccatcgccgacggcgccatcgcgccctggtctgcgacgtcctcg
gaatactacgaccgtatcctgaccgggctgtccgacgaactcgggttttctctggacaca
ccgtggaagaagctccccggctccatccaagacgccatcttgtacggcaaggactaccaa
gtccacgtgaaataccgtaaccgatggggtagagaacgtgcatacaccaccggctttgaa
ggggtcatcgcgtcgattgaacgacgacactccgaaaccgaatccgagtggtccaaagaa
aaatacgaagcgtacatgcgtgaaatcgcatgccccacgtgtcgcggtgcgcgcctcaaa
cccgaagtgcttgccgtaaaagtcggtggaaaatctattgcagaggtctgtgaactgtcc
atgcgggactgtcaacagttcctgaacacaatcgaactcggcaccagagaaaaacagatc
gcagccgctgtattaaaagaaatccttgacagattaggttttctccttgatgtgggtctt
gattacctcaccctcgcgcgcgctgcaggaaccctctctggtggagaagcacaacgcatc
cggttagccacacaaattggggcaggacttgtgggtgtgctctacgtccttgatgaaccc
agtattggcctgcaccaacgcgacaaccgccgtctcattgacaccctcactcggcttcgt
gaccttggaaacacactcatcgtcgtcgaacatgacgaagacacgatccgcgcctctgac
tgggtcgtcgacatcggcccaggcgccggggaacacgggggagaggtcgtccactcgggc
acctaccacgacctcctcaccaatgaccgctccatcaccggcgcatacctgtcaggccgc
cgcgccattgcattaccctcagcccgccgcgccatcaacccctcacgctcattaactgtt
atcggggcgaaggaaaacaatctccgcggcgacaacgtcaccttcccgctgggtgttctc
acggcagtcacaggtgtgtctgggtccggaaaatcgaccctcgtgaactccatcctgtac
acagtgctcgccaacaaactgaacggcgcgcgactcgtcgcaggacgccaccggcgcatc
gacggactagagaacctcgacaaagttgttcacgttgaccaaggccccatcggacgcacc
ccacgttccaacccagctacctacaccggggtgtgggaccacgtgcgcaaactctttgcc
ggcaccaccgaagcgaaagtccgcgggtatggtccaggtcgtttctcgttcaacgtcaaa
ggtggtcgctgtgaggcatgctcaggggacggaacaatcaaaattgagatgaatttcctc
cccgacgtgtacgtaccctgcgaggtgtgccacggcgcccgatacaaccgggaaaccctc
gaagtcaccttcaaaggcaagaccgttcaagacgtacttgacatgcccattgaggaagcc
tcgaacttcttctcagctgtccccgcgatcgcccggcacctcaacacactcgtcgatgtt
ggattggggtatgtccgacttggacaacctgcccccaccttgtccgggggagaagcccag
cgtgtgaagctcgcagccgaattgcaaaaacggtcgaccggccgcaccatctacgtgctg
gacgagcccacaaccggactacatttcgaagacattcgtaaactgttgtccgtcctgcaa
ggtttggtggacaaaggaaactcagtcatcgtgatcgagcacaacctcgatgtcatcaag
aacgcggactggatcattgacatgggcccagaaggtggatcaggaggcggactagtcgtt
gcggaaggaacacctgaacaagttgcgcaggtttcagaatcccacaccggatacttcctc
aaggaaattcttaatgcacaccccgcagtgcccctaggagatcaagtacccgacattgct
ccacccacaccacgggcaaccaaaaagaaacgctaa
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