Jonesia denitrificans: Jden_1392
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Entry
Jden_1392 CDS
T00972
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
jde
Jonesia denitrificans
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jde03016
]
Jden_1392
Enzymes [BR:
jde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Jden_1392
Transfer RNA biogenesis [BR:
jde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Jden_1392
BRITE hierarchy
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACV09045
UniProt:
C7R4I8
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All DBs
Position
1489166..1490386
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AA seq
406 aa
AA seq
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MSHQATHPTIPVLTHPQDGPADLVNTTVSYQAALRRLDRGHGPFAVDAERASGYRYGDRN
YLIQVRREGAGTFLIDPTAVDDFSELNAVMAADTWIFHAAIQDLGPLRDQGLTPGTIFDT
EVAARLLGLDRVNLAAVTAHFLGVTLEKQHSHQDWSTRPLPSSWLTYAALDVELLGDLAI
SETDALTETRKLRWAHEEFAYIQAQRAIHRPDPWRRTSGIQRVTDRRRLAVVQHLWNERE
KIARSKDLAPSRILSDRGIIEAAITLPRTVGALLAIHEFGGAANRRRSHQWQRAINHALT
LPSSELPPRRLPAPPKLPPHKIWEEKNPLAATRLTAAREFLDELAATHHLPVENIIQPKV
VRQLLWDATTTPIDVPAYLTNNQVRPWQQELVAQTLTMIIDTITTP
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaccaagcaacgcaccccaccatccctgtgctcacgcacccccaagatggtccc
gcagacctggtgaacaccacagtgagctaccaggcggccctgcgacgtctagaccgcggt
catggccctttcgccgtcgatgcagaacgtgcctccgggtaccggtatggagaccgcaac
tacctcattcaagtgcgccgcgaaggcgcggggactttcctcattgaccccacagctgtt
gacgatttcagtgaactcaacgctgtcatggccgccgacacctggattttccacgcggct
atccaagaccttggcccactacgagaccaggggctgacccctggcaccatttttgacacc
gaagttgctgcacgcttattgggtcttgaccgtgtcaacctcgccgcggtgaccgcccac
ttcctgggggtcacgttggaaaaacaacactcccaccaggactggtccactcgcccgcta
ccctcgtcatggctcacctacgcagcccttgacgtggagcttcttggtgatttagcgatc
agtgagacagacgcactcaccgaaactcgcaaactgaggtgggctcacgaagagtttgcc
tacatccaagcacaacgcgccattcaccgccctgacccctggcggcgcacctcggggatc
caacgtgtcaccgaccgccgcaggctcgcagttgtccaacatttgtggaacgaacgcgaa
aaaatcgcacgttcgaaagacctggccccttcacgcatcctgtcagaccggggcatcatc
gaagcagcaatcacattgcctcgcacagtaggggcgctcctggctatccatgaatttggt
ggtgctgccaaccggcgtcgatcccaccaatggcaacgcgccatcaaccacgccctgaca
ctgccctcctccgaactgcccccacggcgcctgcccgccccaccaaaactacccccacac
aaaatttgggaagagaagaacccgctcgcagccacccggctcaccgcagcacgcgagttc
ctcgatgaactcgccgccacacaccacctacccgtggaaaacatcatccaacctaaagtg
gtgcgccaactgctgtgggacgcaaccaccactcccattgacgttcccgcctacctgacg
aacaaccaggtacgcccatggcagcaagagctcgtcgcgcagacactcaccatgatcatt
gacaccatcacaacaccctga
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