Jonesia denitrificans: Jden_2039
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Entry
Jden_2039 CDS
T00972
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K02405
RNA polymerase sigma factor FliA
Organism
jde
Jonesia denitrificans
Pathway
jde02020
Two-component system
jde02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Jden_2039
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Jden_2039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jde03021
]
Jden_2039
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
jde02035
]
Jden_2039
Transcription machinery [BR:
jde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Jden_2039
Bacterial motility proteins [BR:
jde02035
]
Flagellar system
Flagellar assembly proteins
Stator
Jden_2039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
Sigma70_r2
KORA
HTH_5
HTH_23
Rv2175c_wHTH
HTH_1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ACV09677
UniProt:
C7R0L3
LinkDB
All DBs
Position
complement(2226154..2227200)
Genome browser
AA seq
348 aa
AA seq
DB search
MQITVIIALVKKPRDSGDGDLSPSLIRITCAPRVGVKVLEMCPQASRLKRMSTMTDTQER
LVTENLHLVGYHVNDMLVRLPSHVTRDELSSAGQFALVQAARNFDPSSGVPFARFAAIRI
KGALVDELRSMDWVSRGVRKKIRDLNQVSDTLTATLGRTPTRQELATALGVPLSDIDDAR
DQAATKVLSFEGYDGALAEVLPTREVGPEAALIASEQIVYLKSAVSALPERLRAIVEQIF
FEEKSVTEIAESLGVTQSRVSQLRAEAMVLLRDGMNAHLNPDRVPTPEREGGVVHRRREK
YFAEIGERVQATITASKVAQSVRAAEAAVVDALNGGTPHAEPTFATTA
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacagtaataattgctttggtcaagaaaccgcgagattccggggatggggac
ctctccccatcgcttattcgaatcacctgtgcaccccgagttggtgtgaaggtcttggaa
atgtgtcctcaagcctccagactgaaacgcatgagcaccatgacagacacccaagagcgc
ctcgtgaccgagaacttgcatcttgttggctaccacgtcaacgatatgctcgtgcgcctg
cccagccacgtcacacgtgacgaactgtcctcagccggacaattcgctctcgtgcaagca
gcccgcaacttcgacccctcaagcggggtcccgttcgcgcggttcgcagcgatccgaatc
aagggcgccctcgtcgatgaactgcgatccatggattgggtatcacgcggagttcgcaaa
aaaatccgcgacctcaaccaggtgtctgacacactgaccgcaacccttggccgaaccccc
acccgccaagagcttgctaccgcactcggtgtccccctcagcgacattgacgatgctcgc
gaccaggcagccacgaaggtgctcagcttcgaagggtacgacggtgcgctcgccgaggtt
ctccccacccgtgaggttggtccagaagcggcgctcatcgcttccgaacaaatcgtctac
ctcaagtcagctgtctctgctctccccgaacgcctccgcgccattgtggagcaaattttc
ttcgaggaaaagtctgtcacagagatcgccgaatccttgggtgtcacgcagtcacgtgtc
tcacagctgcgtgctgaagccatggtgcttctgcgcgacgggatgaacgcacacctgaac
cccgaccgtgtgccaaccccagaacgtgaaggtggtgttgtccaccgccgccgcgaaaag
tacttcgctgagatcggtgaacgagtccaagcaacaattaccgcatcaaaggtggcacag
tctgtgcgcgccgccgaggcagctgtcgtggacgcgctcaacggcggcactccacacgca
gagccaacgttcgccaccacagcgtaa
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