Jeotgalicoccus sp. ATCC 8456: JEM45_05325
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Entry
JEM45_05325 CDS
T06966
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jea
Jeotgalicoccus sp. ATCC 8456
Pathway
jea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JEM45_05325 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jea03019
]
JEM45_05325 (recQ)
03400 DNA repair and recombination proteins [BR:
jea03400
]
JEM45_05325 (recQ)
Enzymes [BR:
jea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JEM45_05325 (recQ)
Messenger RNA biogenesis [BR:
jea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JEM45_05325 (recQ)
DNA repair and recombination proteins [BR:
jea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JEM45_05325 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
CdsD_PD2
Motif
Other DBs
NCBI-ProteinID:
QQD84089
LinkDB
All DBs
Position
complement(1049960..1051741)
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AA seq
593 aa
AA seq
DB search
MEAILKEYFGYDSFRYGQKEIIENVLAGDNALGILPTGSGKSLCYQVPGLMFGGTTLVIS
PLISLMQDQVDALKKRGISAECINSTMSKVDLNRVMDRMMNGDLQFLYVAPERFNNEAFR
AAVVNTKIPFVAFDEAHCISKWGHDFRPSYQSIIPELKGLLPDAQIVAVTATATEEVEHN
IQELLDIDNHAVFKTSVKRENLILSVNPTYQREQFILSYIQNHIDSSGIVYVSTRAEVEK
LSEYLNEYDIGNVIYHGGLGKKERSINQQKFVSDEVKIVIATNAFGMGIDKPDIRYIIHF
NLPGDLESYYQEIGRAGRDGLDSECILLSTQRDVNLQQFFIDRATASEQYKDHMREKLDL
MIQYNKTNKCLSSFIVKYFNENEYVEACGQCSSCLSKNRTEPMTTEAKLILGLIQNLDGE
LSKELVIQVMRGERADNILSRGLDKEENFGVLDSFRTSEVNHLVEELVMRGYLHYTNHKM
YLIDKSLDILNHKVKLYTVPYRKEYNERVNVSTDSSPNEVLYDRLISTRKTLAEKHKLDE
DAIFTDQILKEFAKKMPQTKQDMMHIQGVGNYKLKHYCPYFLEEIQQHDSQQV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggaagctattttaaaagaatacttcggctatgactcatttaggtatggccaaaaagaa
ataatagaaaacgtgttagccggagacaacgccttaggtatcttaccaactggttctggt
aagtctttatgctatcaagtaccaggcttgatgttcggcggtacgacacttgtgatttct
cccttgatttccctgatgcaagaccaagtcgatgccttaaaaaaacgcggaattagtgca
gagtgtatcaactctaccatgtctaaagtggatttaaatcgagtgatggatcgtatgatg
aacggtgaccttcagttcttatatgttgccccagaacgctttaataatgaagcgtttaga
gcggcagttgtaaacacaaaaataccttttgttgcttttgatgaagcccactgtatatct
aagtggggacatgactttagaccaagctatcagagcattattcccgaattaaagggactc
ttaccagacgcgcaaatcgttgcagtcacagcgacagcgactgaggaagtcgaacataat
attcaagaattattagatattgataatcatgcagtctttaagacaagtgttaaaagagag
aatctcatcttgtctgtgaatccaacctaccaaagagagcagtttatactatcgtatatc
caaaatcatattgattcctcaggtattgtatatgtatcaacccgtgcagaggtagagaaa
ctttctgagtacttaaatgaatacgatattggaaatgttatttaccacggtggactaggt
aaaaaagaacgtagtattaaccaacagaagtttgtctcagacgaagtcaagattgtcatt
gcaacaaacgctttcggtatggggattgataagccggatatccgttacatcattcacttt
aacttacctggtgaccttgaaagttactaccaggaaattgggcgtgccggtcgtgatggt
ttagacagtgaatgtatcttgctatcgactcagcgagatgtaaacttacaacagttcttc
atcgacagagcgacggcgagtgaacagtacaaggaccatatgagagaaaaactagactta
atgatccagtacaataagacgaataaatgcttgagcagttttatcgttaaatattttaat
gaaaacgagtatgtcgaagcctgtggtcaatgttcaagttgcctgtctaaaaatagaaca
gaaccgatgaccactgaagcaaagctgattttgggtctaattcagaatttagatggggag
ctttcaaaagaactcgttattcaagtgatgcgaggcgaacgcgcggacaatatcctcagt
cgtggactagacaaggaagaaaatttcggtgtgcttgattcatttagaacaagtgaagtc
aatcacttagttgaagaattagtgatgagaggctaccttcattacaccaaccacaagatg
tacttaatagataaaagcctagacatattaaatcataaagtaaaactctataccgtacct
taccgaaaagaatataacgagcgtgtcaatgtttcgacagactcctctccaaacgaagtg
ctttacgatagactcatttcgacacgtaagacactcgcagaaaaacataagctagatgaa
gatgcgatttttactgatcaaattcttaaagaattcgccaagaaaatgccacaaactaag
caagacatgatgcacattcaaggcgttgggaactataaactcaaacactactgcccatac
ttcttagaagaaatccaacaacacgatagccagcaagtgtag
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