Jeotgalibaca ciconiae: EJN90_03680
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Entry
EJN90_03680 CDS
T05782
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jeh
Jeotgalibaca ciconiae
Pathway
jeh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJN90_03680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jeh03400
]
EJN90_03680 (mfd)
Enzymes [BR:
jeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJN90_03680 (mfd)
DNA repair and recombination proteins [BR:
jeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJN90_03680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AZP03843
UniProt:
A0A3S9H9A6
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All DBs
Position
complement(781770..785294)
Genome browser
AA seq
1174 aa
AA seq
DB search
MKDIKSFLKKSPNIKAILSQMNDAGNQLVTGISSSARNLLTSMIYEEIQKTIVVWAPNLL
QATQIFEDINQINPEIPSFLFPVEESLPVELAFSSPEFRSQRIEALHFLESGQKGIVVIP
TAGFKKLLAPVSVWRNHILSFVEGEETAFEELAEKLIAMGYVREGMVASPGEFSIRGDIV
DIYSLNEEYPVRIEFFGSEIDRMRFFEPTTQKSFDDPVKKVVVLPAQDTVFPPNILAEQA
DKIEKRIKKAEKSIKNEEVRDRLTVFFRDFIEKAQLGELPENPKMYTSLFFPETTTIMDY
IPEDALLIMDEYGRTLESDRTQELEAADWQEMKIGEGILLPKQKMTAEVREIVKQSNHPK
LFYSLFQKGLGNIRFTAIHPLQYRGVVQFFGQMPMVKVEMDRWLKQEMTVFMVVPDTERA
NKVHQIFADFDIESVIKGHDVIVEGHVNIVVGNLANGFEMPLEKVVFVTEKELFNKAAKR
QPRRQKMSNAERLKSYTELAPGDYVVHVNHGIGKYTGMETIVIDDVHQDYISITYQDGAK
LFIPVTQLHLVQKYVSSESKTPKVNKLGGTEWAKTKNKVASKVEDIADDLIELYAKRESE
KGYAFPRDTQDQIDFENKFPFTETEDQLRSIEEIKVDMQKEKPMDRLLVGDVGYGKTEVA
MRAIFKAVLDGKQAAFLVPTTILAQQHYETLVQRFEELPFEIGLLSRFRTKKQQEETIEG
VRKGSIDIVVGTHRLISKDVVFFDLGLLVVDEEQRFGVKHKERLKSLKATVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQDMGAVRDGIEREMARGGQAFYVYNR
VDTIERKADEIRLLVPDCRVGVAHGQMTEVQLENIMMDFVEGAYDVLVTTTIIETGVDIP
NANTLFIENADYMGLSQLYQLRGRVGRTNRIAYAYLMYQRDKVLSEVSEKRLQAIKDFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVERKRGKTPRRKRINV
EIDLGVNAYIPNDYIEDERQKIDMYKRIQQMKNEEEFYEIQDDFQDRFGDLPNEVTYLAQ
VGLIKHYAELAEAENIRRNDDTIYITFDKDGTKRLQGVTIFESLSSIPLRAQVNMKKEKL
VVSIQIHNVEVPAWMDHLKVFLEASAPEKEKVES
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatattaaatcgtttttaaaaaaatcgccaaatataaaagcaatcttgagtcaa
atgaatgatgctggaaatcaattagttacaggaatttcaagttcagctcgaaatctttta
acctccatgatttatgaggaaattcaaaagacgatagttgtgtgggcgcctaacttactg
caagctacgcaaatatttgaagatattaatcaaatcaatccagaaatacctagttttctt
tttccggtggaagaatcactgccggttgagttagccttttcttctccggaatttcgcagc
cagagaatcgaggccttgcactttttggaaagtggacaaaaaggaattgtcgtaattcca
acagccggttttaaaaagctgttagcacccgtttctgtgtggagaaatcatattctttct
ttcgtagaaggagaagaaacggcttttgaagaattagctgaaaagctaattgccatggga
tatgtacgtgaagggatggtcgcttcgcctggtgaattcagcattcggggagatattgtc
gatatttactcactaaatgaagaatatcctgtacggattgaattttttggttcagaaatc
gatcgcatgcgtttctttgaaccgactacccaaaaatcatttgatgatccggtgaagaaa
gtagtggtattaccagctcaagatactgtctttccgccgaacattctggctgaacaagcg
gataagattgaaaaacgaataaaaaaagctgaaaaatcaataaaaaatgaagaagtaagg
gaccggcttactgtctttttccgcgattttatcgagaaagctcaattaggagagttgccc
gaaaatcctaaaatgtatacgtctttattttttcctgaaacaacgacaattatggactat
attcctgaagatgctctgcttattatggatgaatatggcagaacattagaaagcgaccga
actcaggaacttgaagcagctgattggcaagaaatgaaaatcggcgagggtattctcctc
cccaaacaaaagatgactgcagaagttcgggaaatagtgaagcaaagcaatcaccccaaa
ctgttttattctctatttcaaaagggattagggaacattcgttttactgctatccatcca
ctccagtaccgaggagttgttcaattctttgggcaaatgccaatggtgaaagttgaaatg
gatcgttggttgaaacaagaaatgaccgtatttatggttgtcccagatacagaacgtgcg
aacaaagttcatcagatatttgcagattttgatattgaaagtgtcataaaagggcatgac
gtaattgtggaagggcatgtaaatattgttgtggggaatttagcgaatggttttgaaatg
ccattagaaaaagtagttttcgtaacggaaaaagaacttttcaacaaagctgcaaaacgg
cagcctcgcagacagaagatgtcaaacgccgaacgactaaaaagttatacagaattagca
ccaggcgattatgttgttcatgtgaatcatggtattgggaaatatactggaatggaaacc
attgttatagatgatgtccaccaagattatatttcgattacttatcaagatggtgcgaag
ctgttcatacctgtcacccagctgcaccttgttcagaaatatgtttcttctgaatcgaaa
acgcctaaagtaaacaaattaggtggaacagaatgggctaagacaaaaaataaagttgct
tctaaagtagaagatattgccgatgatctgattgaattatatgcaaaacgcgaatcagaa
aaaggctatgcttttcctcgagatacccaagatcaaattgattttgagaataaatttcct
tttactgaaacggaagatcagctaagaagtatcgaagaaattaaagtggatatgcaaaaa
gagaaacctatggatcgtctattagtgggagatgtaggctacgggaaaacagaagtagct
atgcgggcaatttttaaagctgttctggatgggaaacaagcagcattcttggttccgaca
accattcttgctcaacaacactatgagacattggttcaacgttttgaagagttaccattt
gagattggattgctgagtcgtttccgcacgaaaaaacaacaagaggagacgattgaagga
gtccgtaaaggcagcattgatattgtggtaggaacacatcggttaatttcaaaagatgtt
gtattttttgatctgggcttattggttgtagatgaggagcagcgcttcggtgtcaaacat
aaagaacgcctgaagtctttaaaagcgactgtggatgtacttacattgaccgcaacgccg
attccgcgtactttgcatatgtctatgttaggagtgcgggatctttctgttattgaaact
cctccagcgaaccgttatcctgtacaaacttatgtaatggagcaagatatgggagctgta
cgagacggaatagagcgagagatggcacgaggcgggcaggctttctatgtctataatcgt
gtagatacaatcgaaaggaaagccgatgagattcgcttgcttgtaccagactgtcgagta
ggagttgcacacggtcaaatgacggaagtccagttagagaatattatgatggatttcgta
gaaggggcttatgatgtactggttacgacaacaattattgaaacaggtgtagacattcca
aatgcaaacacgctctttatcgaaaatgctgactatatggggctatctcaattgtatcag
ttgagaggaagggtgggcaggacgaatcgaattgcttatgcctatttaatgtaccaacga
gataaggtactgagtgaagtgagcgaaaaaagattgcaagcaatcaaagattttactgaa
ttaggctctggtttcaaaattgcgatgcgtgacttatcaatccgtggtgcaggtaattta
ctaggagcgcaacagcacggatttattgattcagttggttttgatttgtactctgaaatg
ctgagtgaagcagtggagaggaaacgtggaaaaacacctcgaagaaaacgaatcaatgta
gaaatcgacctaggtgtcaacgcttatattcctaacgattatatagaagacgaacgccaa
aaaattgatatgtataaacgtatccaacaaatgaagaatgaagaagaattttacgagatt
caagatgatttccaagaccgttttggagatttgccgaacgaagtaacctatttagcacaa
gtcggtctgattaaacactatgcagagctggcagaagcagaaaatatcagacggaatgac
gataccatttatattacttttgataaggatggaacaaagcgcctgcaaggagttacgata
tttgaatcattaagcagtattccattacgggcacaagtaaatatgaagaaagaaaagcta
gtcgtctcgattcaaattcacaatgttgaagttccagcttggatggatcatctaaaagtc
ttcttagaagcaagcgctcctgagaaggaaaaagtagaaagttga
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