Jeotgalibaca ciconiae: EJN90_05000
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Entry
EJN90_05000 CDS
T05782
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jeh
Jeotgalibaca ciconiae
Pathway
jeh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jeh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJN90_05000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jeh03019
]
EJN90_05000
03009 Ribosome biogenesis [BR:
jeh03009
]
EJN90_05000
Enzymes [BR:
jeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJN90_05000
Messenger RNA biogenesis [BR:
jeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJN90_05000
Ribosome biogenesis [BR:
jeh03009
]
Prokaryotic type
rRNA helicases
EJN90_05000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AZP04076
UniProt:
A0A3Q9BK12
LinkDB
All DBs
Position
complement(1087273..1088841)
Genome browser
AA seq
522 aa
AA seq
DB search
MKFSELGLVPELLKSVESMGFEEATPIQEQTIPLALEGLDVIGQAQTGTGKTAAFGLPML
QKIDTSKQVIQGLVIAPTRELAIQTQEELYRLGREKRVSVQVVYGGADIGRQIRALKNKP
HIVVGTPGRLLDHIRRKTLRLSEIQTLVLDEADEMLNMGFLDDIEAIISETSADRQTLLF
SATMPPSIKRIGVQFMQKPEHVQIKASHMQANLIDQYFVKCKDFEKFDNMTRLFDVQSPE
LAIVFGRTKRRVDELSKGLELRGYRAEGIHGDLTQKKRMSVLKDFKSGNLDILVATDVAA
RGLDITGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFVTPNEMDYLRTIEKLTGK
EMSPLRPPSDEEALRGQMKTAVDEISRLVKETDATKYSRAVEFLMEEFSAEELAAAFVKS
QAKDSTDVPVKITPERPLPSRNKKRNYNKSGGGYKGGRSSDRRSSGERGGSRSRSHEGGK
NRSGGKRRDDRKRDDRSGSGYKGQNKGQNKGKKPGFTIRNND
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagaactgggactagttcccgaactactaaaatccgttgaatcaatgggt
tttgaagaagcaactccaatccaggaacaaacgataccattggcactagaaggacttgac
gtaattggtcaagcacaaaccggtacaggtaagactgcagcatttggtttaccaatgctt
caaaagatcgatacatcaaaacaagtgattcaaggtttggtgattgcgccaactcgtgaa
ttggctattcaaacgcaagaagaattataccgcttaggacgcgaaaaacgcgtatctgtt
caagttgtatatggtggagcggacattggacgccaaattcgtgcgcttaaaaacaaaccg
catatcgtagtaggaacgcctggtcgtctattagaccacatccgtcgtaaaacattacgt
ttaagcgaaattcaaacgcttgtcttagatgaagcagacgaaatgttaaatatgggattc
ttggatgatattgaagcaatcatcagcgaaacttctgctgatcgtcaaacgcttctattt
tctgcaacgatgccgccaagtattaaacgcattggtgtacaattcatgcagaaaccagaa
cacgtacaaatcaaagcatctcatatgcaagcaaacttgattgatcaatactttgtgaaa
tgtaaagactttgagaagtttgataacatgactcgtttattcgatgttcaatcccctgaa
ttagcgattgtattcggacgtacaaaacgccgtgtagatgaactttcaaaaggtcttgaa
ctacgtggttaccgcgctgaaggaattcacggtgacttaactcagaaaaaacgtatgagt
gttttgaaagactttaaatcaggaaacttagatattttagttgctacggacgtagctgct
cgtggattagatattacgggagtaacacacgtatacaactatgatattcctcaagaccct
gaaagctatgtgcaccgtattggtcgtactggccgtgctggtaaagaaggaatgtctgtt
acattcgttacaccaaacgaaatggattatctacgtacgattgaaaaattaacaggaaaa
gaaatgtctccgttgagaccaccttctgatgaagaagcgttgcgcggacaaatgaaaaca
gctgttgatgaaattagtcgtctagtaaaagaaacagatgctactaagtatagtcgtgct
gtagaatttttaatggaagaattctctgctgaagaacttgcagcggcattcgttaagagc
caagcaaaagattcgacagatgtaccagtaaaaattacaccagagcgtccgttaccatca
cgtaataaaaaacgtaattacaataaatctggtggcggatataaaggcggccgttcaagt
gatcgtcgttcttcaggagaaagaggcggaagccgttctcgcagccatgaaggcggaaaa
aatcgttccggtggtaaacgccgtgatgatcgcaaacgcgatgaccgttcaggttcaggc
tataaaggccagaataaaggccaaaataaaggcaaaaaaccaggatttacaatccgtaat
aacgattaa
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