Jeotgalibaca ciconiae: EJN90_07655
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Entry
EJN90_07655 CDS
T05782
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jeh
Jeotgalibaca ciconiae
Brite
KEGG Orthology (KO) [BR:
jeh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jeh03016
]
EJN90_07655
Enzymes [BR:
jeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EJN90_07655
Transfer RNA biogenesis [BR:
jeh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EJN90_07655
Prokaryotic type
tRNA splicing ligases
EJN90_07655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZP04517
UniProt:
A0A3S9HB12
LinkDB
All DBs
Position
1612856..1613992
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AA seq
378 aa
AA seq
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MKKDELHLSGQFTDAKVFTTNIDEETIAQIERLLNHPFSKGSQIRIMPDAHIGKGAVVGT
TMTFSDKIVPDVVGVDIGCGMFVAQLTEKNLKRKDLQRLDEMIRKYVPSGTGIRQKPHRF
IDSVPLDEIRAENVNKERAALSLGTLGGGNHFIELNIDEEGNHFLIIHSGSRSFGHSVAS
YYQQKAVEYWAERDNKNDENHYVDPEFAYLIGEDLQDYLHDIAIVQRFAYLNRKAMSLKI
IEAMNWDISRSFDVIHNYVDIENRILRKGSISARKGEEIVIPINMRDGSILAKGKGNPEW
NYSAPHGAGRLLSRTQARKQLEMRDFVKTMKDIYTTSVRKNTLDEAPFAYKPMKEILERT
EDSFEIKAILKPIYNFKA
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagatgagttacacttgtcaggtcagtttacagatgcaaaagtttttacgaca
aatattgacgaagaaacaattgctcaaattgaacgtttattaaatcatcctttttcaaaa
ggaagtcaaattcgcattatgccagatgctcatattgggaaaggtgctgtagtcggaaca
acgatgactttttcagataaaattgttcccgatgtagtgggagtcgatattggctgtggc
atgtttgtagcacagttaactgagaaaaatttgaaaagaaaagacttgcagcgtttggat
gagatgattcgcaaatacgtgccaagcgggacgggaattcgacagaaacctcatcgattt
atagattccgttcctttagatgaaattcgagctgaaaatgtaaataaagaacgagcagca
ctttctctgggaacgctaggtggtggaaatcattttattgagttgaacattgacgaagaa
ggaaaccatttcttgatcattcattccggttcgcgttcattcggtcattccgttgcaagc
tattatcagcaaaaagcagtagaatattgggccgaacgagataataagaatgatgaaaat
cattatgtagatcccgaatttgcctatttaattggtgaggatcttcaagattacttgcat
gatatagcgattgtacaacgcttcgcatatctaaatcgaaaagcgatgagtttgaaaatt
atcgaagcaatgaattgggatatcagcagatcctttgatgtgatccataattacgttgat
atcgaaaataggattctccggaaaggttcgatttctgctcgaaaaggggaagaaatcgtc
attccaattaacatgagggatggcagtattctagcaaagggaaaagggaatccagaatgg
aattactcagctcctcatggggctggccgattactatcccgaacgcaagcgcgcaaacag
ttagaaatgcgtgattttgttaaaacgatgaaagatatctatacaacatctgtccgcaaa
aatactttggatgaagcaccatttgcatataaaccaatgaaagaaatcttagaacgtaca
gaggattcttttgaaataaaagcgattctcaagccgatttataactttaaggcataa
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