Jeotgalibaca sp. MA1X17-3: LZ578_00635
Help
Entry
LZ578_00635 CDS
T08634
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jem
Jeotgalibaca sp. MA1X17-3
Pathway
jem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LZ578_00635 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jem03021
]
LZ578_00635 (rpoC)
03400 DNA repair and recombination proteins [BR:
jem03400
]
LZ578_00635 (rpoC)
Enzymes [BR:
jem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LZ578_00635 (rpoC)
Transcription machinery [BR:
jem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LZ578_00635 (rpoC)
DNA repair and recombination proteins [BR:
jem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LZ578_00635 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UJF15745
LinkDB
All DBs
Position
complement(137538..141185)
Genome browser
AA seq
1215 aa
AA seq
DB search
MIDVNNFDQMQISLASSDKIRSWSYGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWKC
SCGKYNGIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHVWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVIEPGDTTLESKQLLTENEYREKRAQYGKSFHAAMGADAVRQLLN
RVELEEECAELKEALKTATGQKRTRAIRRLDILDAFRTSGNKPEWMVMDVVPIIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFLMKELVQRDLAGNIKNAKRKIDRMDEDVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEKGKMGEGMSFSTPEEVEMAYQNGYVHLHTRIALN
TSSLPKKPWKENQKNSLLVTTVGKVLFNEIMPDEFPYLNEPTQENLDEATPDRFFVEPGT
DVRAFIENQEIVGPFKKKNLGNIIAAVFKKFHVTETSRMLDLMKDLGYHISTRSGITVGI
ADILVLQSKEVIIDKAHTQVEGITKQFRRGLISDDERYNSVINTWNQAKDEIQKELMLTL
DQENPIYMMSDSGARGNISNFTQLAGMRGLMASPSGKIMELPVISNFREGLTVLEMFSST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREDDCGSDRGLIISSIREGNEVIETLE
ERLLGRYVQKTIVHPETGELIAEFNDLITEDISKRIIDAGIEELTIRSVFTCNTKHGVCK
HCYGMNLATGNEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAIITEVTGEVISIDENAAERSKEVTVKGVTDTRTYNVPYTGRMKVEEGDFVH
RGDPLTEGSINPKELLRVRDVLSVETYLLREVQKVYRMQGVEIGDKHIEVMVRQMLRKVR
IMDPGSTEILPGTLLDIADFTNQNASSIKAGEVPATARPVLLGITKASLETNSFLSAASF
QETTRVLTDAALRGKKDSLLGLKENVIIGKTIPAGTGMARYRKMEPKAVHTGTESAYSIG
ETGSATTDEHLTVKE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataattttgatcaaatgcaaatttctctggcttcatctgataaaatc
cgtagctggtcctatggagaagtaaaaaaaccagaaaccattaactatcggacattgaaa
ccagaaaaagaaggtttattctgtgaacgaatttttggacctcaaaaagattggaaatgt
tcttgtggaaaatacaatggtattcgctacaaaggaattgtttgtgatcgttgtggtgta
gaagttacccgttctaaagttcgtcgtgaacgtatgggacacattgaattagctgcacct
gttactcacgtgtggtatttcaaagggattccaagtcgtatgggtcttgtattagatatg
agtccacgtgcattggaagaagtcatttattttgctagctatgttgtgattgaaccagga
gacactactctggaatcaaaacaattactgacagaaaatgaataccgtgaaaaacgtgca
caatacggaaaaagtttccatgcagcaatgggagcagacgctgtcagacagttgcttaac
cgtgtggagctagaagaagaatgtgctgaattaaaagaagctttgaaaactgcaaccgga
caaaaacgtacacgtgcaatccgtcgtttagatatcttggatgcattccgtacttcagga
aacaaaccagagtggatggttatggacgttgttccaattatcccaccagatttacgtcca
atggttcaattagagggtggacgttttgcaacaagtgatttgaatgatctttatcgtcgt
gttattaaccgtaataatcgtttgaaacgtttattagatttaaatgcaccgaatatcatt
gttcaaaatgaaaagcggatgctgcaagaagcagtggatgctctaattgataacggtcgt
cgtggacgccctgttaccggacctggtaatcgtccgttgaaatctttatcccatatgctg
aaaggaaaacaaggacgtttccgtcagaacttactgggtaaacgggttgactattccggt
cgttccgttatcgtagtaggaccttccttgaagatgtaccaatgtggacttcctaaagaa
atggcattagaactatttaaaccatttttgatgaaggaattagttcaacgtgatttagct
ggaaatatcaaaaatgcgaaacgtaaaattgatcgaatggatgaagatgtttgggatgta
cttgaagatgtcattcgtgaacaccctgttttgctaaaccgagcacctacgcttcataga
ttgggtatccaagcctttgaacccgtattagtagaaggaaaagcaatcagattacatcca
ttggtatgtgaagcttataatgccgactttgatggagaccaaatggctgtccatgttcct
ttaagtgaagaagcgcaagcagaagctcgcttattgatgttggctgcacaaaacattttg
aatccgaaagatggtaaaccagttgtaacaccatctcaagatatggtcttgggtaactat
tacttaaccatggaagaaaaaggaaaaatgggagaaggtatgagtttctctacgcctgag
gaagtggaaatggcttatcaaaatggctatgtacacttacacactcgtattgcactaaat
acaagctcattacctaagaaaccttggaaagaaaaccaaaaaaattccttgttagttaca
acagtagggaaagttctctttaatgaaattatgccggatgaattcccatacttgaatgaa
ccaacacaagaaaacttggacgaagctactcctgatcgcttctttgtggagccaggaaca
gatgtgagagcatttatcgaaaaccaagaaattgtaggaccatttaagaagaaaaatcta
ggtaacatcattgctgctgtgttcaagaagttccatgttacagaaacttctagaatgttg
gaccttatgaaagatttgggttaccatatctcaactcgttcaggtattacagtagggatt
gcagatattttggtattacaatctaaagaggttattattgataaagctcatacacaagtc
gaaggaattacaaaacagttccgtcgtggtttaatttcagatgatgagcgttataacagt
gtaatcaatacttggaaccaagcgaaagatgaaattcaaaaagaattgatgcttacattg
gaccaagaaaacccaatttatatgatgagtgattccggagctcgtggtaatatctctaac
tttactcagttagcaggtatgcgtggtttgatggcttctccaagtgggaaaatcatggaa
cttccagttatttcgaatttccgtgaaggattaactgtcttagaaatgttctcctccact
cacggagctcgtaaaggaatgaccgatactgctctgaaaacagctgactctggttacttg
actcgccgtttagttgacgtagctcaagacgtaattgttcgtgaggatgattgtggatca
gatcgtggtttgattattagttcgattcgtgaaggaaacgaagtaattgaaacgttagaa
gagcgtctacttggacgttacgtacagaaaacaatcgttcatccagaaactggtgaactg
attgcagaatttaatgatttaattacagaagatatttcgaagagaattattgacgctgga
attgaagaacttaccattcgttctgtctttacttgtaacaccaaacatggcgtatgtaag
cattgttatggtatgaacttggcaactggaaacgaagtagaagttggagaagcagtagga
acaattgctgcccaatccatcggtgaacccggaactcagttgacgatgcgtaccttccat
actggtggagttgctggtgatgatattacacaaggacttcctcgtattcaagaaatattt
gaagctcgtaatccgaaaggacaagcaatcattaccgaagttactggtgaagtaatttcg
attgatgaaaatgcagcagagcgttccaaagaagttaccgttaaaggggtaacagataca
cgtacttataatgtaccgtatacgggtcgtatgaaagttgaagaaggtgactttgtacat
cgtggagatccactaacagaaggatctatcaatccaaaagaactgttacgtgttcgcgat
gtgttgtcggttgaaacctacttattacgtgaagtacaaaaagtataccgtatgcaaggg
gtagaaattggagacaagcatattgaagtaatggttcgccaaatgcttcgtaaagtgcgt
attatggacccaggctctacagaaatccttccaggtactttattggatattgctgacttt
actaaccagaatgcttccagtattaaagctggtgaagttcctgcaacggcacgtcctgta
ctgttaggtattacaaaagcttccttggaaacgaatagcttcttgtctgctgcttcgttc
caggaaaccactcgtgtactaacagatgctgctcttcgtggtaagaaggattctctatta
ggtctgaaagagaatgttatcatcgggaagacgattccagcaggtacgggtatggctcgt
tatcgcaaaatggaacctaaagcagtacataccggtacagaaagtgcatatagcattgga
gaaaccggtagtgctacaacagatgaacatctgacagtaaaagaataa
DBGET
integrated database retrieval system
