Jeotgalibaca sp. MA1X17-3: LZ578_01955
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Entry
LZ578_01955 CDS
T08634
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jem
Jeotgalibaca sp. MA1X17-3
Pathway
jem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ578_01955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jem03019
]
LZ578_01955
03009 Ribosome biogenesis [BR:
jem03009
]
LZ578_01955
Enzymes [BR:
jem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZ578_01955
Messenger RNA biogenesis [BR:
jem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ578_01955
Ribosome biogenesis [BR:
jem03009
]
Prokaryotic type
rRNA helicases
LZ578_01955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Arginosuc_synth
NAT10_TcmA_helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
UJF15934
LinkDB
All DBs
Position
382457..384010
Genome browser
AA seq
517 aa
AA seq
DB search
MKFSELGLDPQLLKAVENMGFEETTPIQEQTVPLGLKGIDVIGQAQTGTGKTAAFGLPML
QKIDPNNKSIQALVIAPTRELAIQTQEELYRLGREKRVSVQVVYGGADISRQIRALKNNP
QIIVGTPGRLLDHIKRKTMRLGNVETLVLDEADEMLNMGFLEDIEAIISQTPAERQTLLF
SATMPPSIKRIGVKFMNDPQHVQIKAAEMTASLLDQYFVRCKDFEKFDTMTRLLDVQNPE
LTIVFGRTKRRVDELAKGLEMRGYRAEGIHGDLTQQKRMSVLRDFKKGELDILVATDVAA
RGLDITGVTHVYNYDIPQDPESYVHRVGRTGRAGHEGMSVTFVTPNEMDYLRTIEKLIRK
EITPLKPPSDEEAFRGQLKNAVDEAERIVKETEDDKFHRAALHLLETHSGEDLVAAFLKS
LSKDSAEVPVKITPERPLPSRNKKGGSNKGGGRSGGYKGRGGRSGDRRSSGSGEKGNRTR
SSEGGKRRDDKRSDDRRSKGSTSNKKGTGGFTIRNKD
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagaactgggacttgatccccaactattaaaagccgtagaaaatatgggc
tttgaagaaactacaccaatccaggaacagaccgttccactaggtttaaaaggtattgac
gttattggacaggcgcaaacaggtacaggtaaaacagctgcatttggtcttccaatgtta
cagaaaatcgatcctaacaacaaatcaattcaagcattagttattgcaccaacacgtgaa
ttagctattcaaacacaagaagaactatatcgtttaggacgcgaaaaacgcgtttctgta
caagtagtatatggtggagcagatattagccgccaaattcgtgctttgaaaaacaatcca
caaataattgtgggtacaccaggacgtctattggaccatatcaaaagaaaaacaatgcgt
ttaggcaatgtagaaactttggtattggacgaagcagacgaaatgttgaacatgggcttc
ttagaagacatcgaagcaattatttctcaaacgccagctgagcgtcaaacattactattc
tcagcaactatgccaccatcaatcaaacgtattggtgttaaattcatgaatgatccacaa
cacgttcaaattaaagcagctgaaatgacagctagcttattggaccaatattttgtgaga
tgtaaagacttcgagaaatttgatacaatgactcgtttgttggatgtacaaaatcctgaa
ttgaccattgtatttggacgtacaaaacgtcgtgttgacgaacttgctaaaggattggaa
atgcgcggatatcgtgctgaaggaatccatggtgatttaactcaacagaaacgtatgagc
gttcttcgtgatttcaaaaaaggtgaattagatattttagttgctaccgacgtagcagca
cgtggattagatataacgggtgttacacacgtttataactatgatatccctcaagaccca
gaaagctatgtacaccgtgttggacgtacaggccgtgctggacacgaaggaatgtctgtt
acttttgtaacaccaaacgaaatggattacttgcgcacaattgaaaaattgattcgtaaa
gaaattactccattgaagccaccatccgatgaagaagctttccgtggtcaattgaaaaat
gccgtggatgaagctgaacgtatcgtaaaagaaacggaagatgataaatttcatcgtgca
gctcttcatttattggaaactcacagtggagaagatttagttgcggctttcttgaagagc
ctatctaaagattcagctgaagttccagtgaagatcacaccagaacgcccattgccatca
cgcaataaaaagggtggttctaataaaggtggaggccgtagtggcggatataaaggaaga
ggcggacgttcaggcgatcgtcgttcatctggatccggagaaaaaggcaatcgtacacgt
agttctgaaggcggtaagcgcagagacgacaaacgttctgatgacagaagaagcaaaggt
tctacttctaataaaaagggaactggcggatttacaatcagaaacaaagactaa
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