Jeotgalibaca sp. MA1X17-3: LZ578_03475
Help
Entry
LZ578_03475 CDS
T08634
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jem
Jeotgalibaca sp. MA1X17-3
Pathway
jem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LZ578_03475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jem03400
]
LZ578_03475 (mfd)
Enzymes [BR:
jem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZ578_03475 (mfd)
DNA repair and recombination proteins [BR:
jem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LZ578_03475 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Gln-synt_C-ter
Motif
Other DBs
NCBI-ProteinID:
UJF16204
LinkDB
All DBs
Position
700757..704287
Genome browser
AA seq
1176 aa
AA seq
DB search
MKDIENFLRDTPNIKNIIKQAEQEGNQLVTGISSSARNLLTSMVYESQEKPVVVWASNLL
HATQIYEDLNQINPNIPIHLFPVEESLAVELAFSSPEYRSQRVDALHFLSSGEKGIVVVP
TAGFKKILAPPSIWKEYNLVFQVGNEMEFETLPQKLVAMGYVREQMVASPGEFSVRGDIL
DIYSLNEENPIRIEFFGSEIDGLRFFDPSTQKSIEEQVEEVLVLPAQDSVFPSKVLKERA
ENIEKLFKKAQKALKNEEVKKRMSVYFEDFIEKLHIGELPTVPQMYASLFYPELPTILDY
IPEETLFIMDEYSRTLENDRTQETEGAEWQEAKLYEGVILPKQVMLAEVRDIVKKSNHSK
IFYSLFQKGLASVRFKEIHALQYRGVVQFFSQMPMVKVEMDRWLKQGMTIFTIVADSERA
EKVHRTFSDFDIESVVKGQDKVVPKHVNIVVGGMANGFEMPLEKVVFLTEKELFNKVKKR
QPGRQKMSNAERLKSYTELVPGDFVVHVNHGIGQYTGMETIERNGIHQDYISILYQDSAK
LFIPVTQLHLVQKYVSSESKTPKVNKLGGTEWAKTKNKVASRVEDIADELIELYANREAE
KGYAFPRDNQDQVEFENSFPYTETDDQLRSIAEVKKDMEKEKPMDRLLVGDVGYGKTEVA
MRAVFKAVLDGKQAAFLVPTTILAQQHYETLIQRFEDLPFEIGLLSRFRTKKQQTETIKG
IRKGSVDIVIGTHRILSKDIEFFDLGLLVVDEEQRFGVKHKERLKALKASVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNMGAVRDAIEREMARGGQAFYVYNR
VDTIERKADELRLMIPDCRVGVAHGQMTEIQLENIMVDFVEGNYDVLVTTTIIETGVDIP
NANTLFIENSDHMGLSQLYQLRGRVGRTNRIAYAYLMYNPNKILSEISEKRLQAIKDFTE
LGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSEMLSEAVERKRGKGKRPKRISV
EIDLDVNAYIPVTYIEDERQKIDMYKRIQQISSEEEYYEIQDDFVDRFGEYPEEVGHLTQ
IGLLKNVAESAEAEILKRSGDRVDVTFTKEGTVRLQGAAIFEALSTIPLRAQVNLQKEKL
VVTLQIDKQTTSAWMDYLKVFLESCSVETEEKDTES
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacatagaaaactttttgagggatactcccaatataaaaaatattattaaacaa
gccgagcaagagggaaatcaattagtgacggggatttccagttctgctcgtaatttactg
acttcaatggtgtatgaatctcaagaaaaacctgttgtagtatgggcttctaacttattg
catgctacacagatttatgaagacttaaaccaaattaatccgaacatccccatccatctt
tttccagtggaagaatctttggcagtggaacttgccttttcttctccagaatatcgtagt
caacgagtggatgctcttcactttctaagtagtggtgaaaaaggaatcgtagtcgttcct
actgcaggattcaaaaaaatattggcaccaccttctatttggaaagaatataacttagtt
ttccaagttggaaatgaaatggaatttgaaacacttcctcaaaagctagtagccatgggg
tatgttcgtgagcaaatggtggcttcgccaggagaattcagcgttcgaggagatatcctt
gatatttattctttaaacgaagaaaatccaattcgtattgaattttttggttcggaaatt
gatggtcttcgtttctttgatccttctacacagaaatcaatagaagaacaggtagaagaa
gtattagtattacctgctcaggattctgtttttccatccaaagtacttaaagaacgtgca
gaaaacatagaaaaattatttaaaaaagctcaaaaagcattgaaaaatgaagaagtaaaa
aaacgaatgagtgtttattttgaagactttattgaaaagcttcatataggtgaacttcct
acagttccacaaatgtatgcatctttattttatccagaacttcctactattttagattat
attcctgaagaaacattatttattatggatgagtactcccgtacattggaaaatgatcga
acgcaagaaacagaaggagcagaatggcaagaagcaaaattatatgaaggggttatttta
cccaaacaagtgatgttagctgaagttcgtgatattgtaaaaaagagcaatcattctaaa
atattttattctctttttcaaaaaggcttagcaagcgttcgtttcaaagagattcatgct
ttacaatatcgtggggttgttcaattctttagccagatgccaatggtgaaagtagagatg
gatcgttggttgaaacaaggaatgacgatctttacgattgtcgcggattcagaacgtgct
gaaaaagtacatcgcaccttttctgattttgatattgaaagtgttgtaaaaggacaggat
aaagttgttccaaagcatgtgaatatcgttgtaggtggaatggcgaatggatttgagatg
cctcttgaaaaagtagtctttttaactgaaaaagaactatttaataaagtgaaaaaaaga
caacctggtcgacagaaaatgtctaatgcagaacgattgaaaagctatactgaactagtt
cctggtgattttgttgttcatgtaaaccatgggattggtcaatatactggaatggaaacc
attgaacggaatgggattcatcaagattatatttctattttatatcaagatagtgccaaa
ctgtttataccagttactcagttacacttggtacaaaaatacgtctcttctgaatcaaaa
actcctaaagtaaataaattaggaggaaccgaatgggcaaaaacgaagaataaagttgcg
tctcgagtagaagatattgctgatgagttaattgaactatatgcaaaccgagaagcggaa
aaaggatatgcttttccacgtgataatcaagatcaagttgaatttgaaaatagttttccg
tataccgaaaccgatgatcagttacgaagtattgcagaagttaaaaaggatatggaaaaa
gaaaagccgatggatcgtctcctagtaggggatgttggttatggaaaaacagaagtagct
atgcgagctgtttttaaagcggtactagatggaaaacaagcagcttttctggtgcctaca
accattttggcgcagcaacactatgaaacgttaatccaacgttttgaagatttaccgttt
gagatagggttgttaagtcgctttcgcactaaaaaacaacaaaccgaaaccatcaaagga
attcgaaaaggatcagttgatatcgtaattggtactcatcgtattctgtctaaagatatt
gagttttttgatttgggactgttagttgttgatgaggaacagcgttttggcgtgaagcat
aaagagcgattaaaagctttgaaagcatccgttgatgttcttacgttaacagcgactcca
attcctcggaccttacatatgtccatgctcggagtacgagatttatcggttattgagacc
ccacctgcaaaccggtaccctgtccagacgtatgtgatggaacagaatatgggagccgtc
cgtgatgcaattgaacgtgaaatggctcgtggtggtcaagccttttatgtatataaccgg
gtagataccattgaacgaaaagcagatgaacttcgtttgatgattccagattgccgagta
ggcgtcgcccacgggcaaatgacagaaattcaactagaaaatattatggttgactttgtg
gaaggaaattatgatgtcctcgttacaacgaccattattgaaaccggagtagatattcct
aatgccaatacgctctttattgaaaactcagatcatatgggcttatcacaattgtatcaa
ctacgtggtcgagttgggcgtacaaaccgaatagcatatgcatatctcatgtataatcct
aataagattttaagtgaaattagtgaaaaacgacttcaagctattaaagactttactgaa
ttaggttctggattcaaaattgcgatgagagatttatctattcgtggtgcaggaaactta
ttagggtcccaacaacatggttttatagattctgtaggatttgatttatattcagaaatg
ctcagcgaagctgtggaaagaaaacgtggaaaagggaaacgtccaaaacgaattagtgtt
gaaattgacctagatgtgaatgcttatattccagtaacgtatattgaagatgaacgtcag
aaaattgatatgtataaacgaatccaacaaattagtagtgaagaagaatactatgaaatt
caagatgattttgtggatcggtttggagagtatccagaagaagtaggacaccttactcaa
ataggtcttttgaaaaacgttgcagagtcagccgaggccgaaatcttaaagaggtcaggt
gatcgagtggatgtaacctttactaaagaaggaaccgttcgtcttcaaggagcagctatt
tttgaagcgctaagtaccattccactccgagcacaagtcaatctacaaaaagaaaaatta
gtagtaaccttacaaattgataaacaaacaacaagtgcatggatggattacttaaaagta
ttcttggagtcgtgctctgtggaaacagaagaaaaagatacagagagttga
DBGET
integrated database retrieval system
