Jeotgalibaca sp. MA1X17-3: LZ578_05120
Help
Entry
LZ578_05120 CDS
T08634
Name
(GenBank) HRDC domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jem
Jeotgalibaca sp. MA1X17-3
Pathway
jem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ578_05120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jem03019
]
LZ578_05120
03400 DNA repair and recombination proteins [BR:
jem03400
]
LZ578_05120
Enzymes [BR:
jem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZ578_05120
Messenger RNA biogenesis [BR:
jem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ578_05120
DNA repair and recombination proteins [BR:
jem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LZ578_05120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
HRDC
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
Helicase_Sgs1
DDE_Tnp_1_5
Motif
Other DBs
NCBI-ProteinID:
UJF16487
LinkDB
All DBs
Position
1028900..1030033
Genome browser
AA seq
377 aa
AA seq
DB search
MIGKDGSTIIYCNTRKNVESVYQTLTKKGFPVARYHGGLSSDERNKNQEDFIYDKKTVMV
ATNAFGMGIDKPDVRKVIHYNMPLDVESYYQEAGRAGRDGAEAEAILLYSAQDIITNTFL
IEQGNQAHATDRLKRMISYCKTGQCLRKFLLNYFDEEPAWQKCEHCSTCDGHTEVYDITV
GCQKILSCIYRMEQRFGTGLITDVLRGKNTERIRSMKFDELSTYGLMSSSSDADIKDMIS
LMLGEGYLMLSGDTYPIIKFTAKTGELLKGKVQLLMTKKIVEDVPEQKKKSTEAYDYDET
LFEELRILRTEIAKDIGKPPFVVFADRSLMDMAEKLPLTDQDFLEIHGVGQTKLETYGDA
FLSVIHTYTKNKTVISS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgattggaaaggatggttcaacaattatttattgtaatacgcgaaaaaatgtagagtcc
gtttatcaaacgctaactaaaaaaggatttccggtagctcgctaccatggcggtttaagt
tcggatgaacgtaataaaaatcaagaggattttatttacgataaaaaaacagtaatggta
gcgacgaatgcgtttggtatgggaattgataaaccagatgtaagaaaggttattcattat
aatatgccattggatgtagagagttattatcaagaagcaggaagagctggtagagatgga
gctgaggctgaagcaattcttttgtattcggcacaagatattattacgaatacattctta
atcgaacaagggaatcaagctcatgcaacggatcgcttaaaaagaatgatttcctattgt
aaaacagggcagtgtttacgaaaatttcttcttaattattttgatgaagagcctgcttgg
caaaaatgtgaacattgttctacttgtgatgggcacactgaagtatatgatataactgtg
ggatgtcagaaaatcctttcttgtatttatcggatggaacaacgatttggtacgggatta
attactgatgttcttagaggaaagaatacagaacgaattcggagtatgaaatttgatgaa
ctctctacctatggattgatgtctagctccagcgatgcagatattaaagatatgatttct
ttaatgcttggagaagggtacttgatgctttctggagatacgtatcctattataaaattc
actgctaaaacaggtgaacttctcaagggaaaagttcaattactgatgacgaaaaaaatt
gtagaggatgtacccgaacaaaagaaaaaatctactgaagcatatgactatgatgaaact
ttatttgaagaacttcggatattgcgaacagagattgctaaagatatcggaaaacctcct
tttgttgtttttgcagatcgtagtttaatggatatggcagaaaaattgcctcttacagat
caagattttttagaaatccatggggtaggacaaactaaattagaaacgtatggagacgca
tttctttctgttatacatacatatacaaaaaacaagacggttatatccagttaa
DBGET
integrated database retrieval system
