Jeotgalibaca sp. MA1X17-3: LZ578_08055
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Entry
LZ578_08055 CDS
T08634
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
jem
Jeotgalibaca sp. MA1X17-3
Pathway
jem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ578_08055 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jem03019
]
LZ578_08055 (pnp)
03016 Transfer RNA biogenesis [BR:
jem03016
]
LZ578_08055 (pnp)
Enzymes [BR:
jem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LZ578_08055 (pnp)
Messenger RNA biogenesis [BR:
jem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LZ578_08055 (pnp)
Transfer RNA biogenesis [BR:
jem03016
]
Prokaryotic type
tRNA degradation factors
LZ578_08055 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
M20_dimer
S1_2
Spt6_S1
CvfB_2nd
DUF3294
Motif
Other DBs
NCBI-ProteinID:
UJF14961
LinkDB
All DBs
Position
complement(1627150..1629273)
Genome browser
AA seq
707 aa
AA seq
DB search
MTEKKVFQMDWAGRPLQVEIGQMAKQANGAVLVRYGDTVVLSAAVGSKEPKDTNFFPLTI
NYEEKMYAVGKIPGGFIKREGRPSEHATLTARLIDRPIRPMFADGFRNEVQVTNVVMSVD
QECTPEMSAMLGSSLSISVSDIPFAGPIAGVHVGRVDGEFILNPTPEQKEKSDIELTVAG
TKDAINMVESSAQVVGEEDMLAALMFGHDAVKELCAFQEKIIAEIGKEKMEVTLLSNDAE
LVSIAEENFSEKMKTAILTKDKKERNDHIDAVKTEILDFFTEKYMESEDFVKIIKEVKQI
TEDIEKNQVRRLITEDKIRPDFRKVDEIRSLDSQVGLLPRVHGSGLFTRGQTQAISACTL
APLGEHQILDGLGLEEGKRFIHHYNFPQYSVGSTGRAMSPGRREIGHGALGERALKQVIP
DEETFPYTIRLVADVLESNGSSSQASICAGSLALMDAGVPIKAHVAGIAMGLVKDGEDYA
ILTDIQGMEDHLGDMDFKVAGTSEGITALQMDIKIQGITKEILEEALIQARKARLEILEH
LNSVLSEPKTELSAYAPKIEMIKIKPEKIKVVIGKGGDTINGIIEETGVKIDIDQDGNVS
IASSDKTMIEKAKKIIEELTHDVKAGEVYEGTVKRVEKFGAFVEITKGKDGLVHISELAN
ERVREVEDVVAVGDKVQVKVLEIDKQGRINLSRKALLSKVEKTENSK
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaaaaaagtattccaaatggattgggcaggacgtccattgcaagtagaaata
ggccaaatggctaaacaagctaatggtgctgttttagttagatatggtgacaccgttgtt
cttagtgcggctgttggaagtaaagaaccaaaggatactaatttcttcccactaactatt
aattatgaagaaaaaatgtatgcagtagggaaaatcccaggtggatttattaaaagagaa
ggtcgcccaagtgaacatgcaacattaaccgcacgtttaattgaccgtccgattcgccca
atgtttgctgatggatttcgtaatgaagtacaagttacaaacgtagtgatgtctgtcgat
caagaatgtactcctgaaatgtcagcaatgctaggatcttccttatctatttctgtttca
gatatcccattcgctggcccaattgctggtgttcatgtaggacgagtagatggagaattc
attttgaatccaactcctgaacaaaaagaaaagtctgatattgaattaacggttgctgga
acaaaagatgctatcaatatggtagaaagtagcgcccaagttgttggagaagaggacatg
ttagcagcattgatgtttggacatgatgccgttaaagaattatgtgctttccaagaaaaa
attattgctgaaattggtaaagaaaaaatggaagtaactttactttccaatgatgcagaa
ttagtttccattgctgaagagaattttagtgaaaaaatgaaaacggctattttaacaaaa
gataaaaaagaacgaaatgatcatatcgatgcagttaaaacagaaattttagatttcttc
actgaaaaatatatggaatcagaagatttcgtgaaaattatcaaagaagtaaaacaaatt
acagaagatattgagaaaaatcaagttcgtcgtttgattacagaagataaaattcgtcct
gatttccgtaaagtagatgaaatccgttcactagattctcaagttggcttacttcctcgt
gttcatggatctggtttatttacaagaggacaaacacaagctatttcagcttgtacacta
gctcctctaggggaacaccaaatcttagatggattaggattagaagaaggaaaacgattc
atccaccattataatttcccacaatactcagttggaagtacaggacgtgcaatgtcccca
ggaagacgtgaaattggtcatggtgcattaggtgaacgtgcattgaaacaagttattcca
gatgaagagacattcccatacaccattcgtcttgtagccgatgtattggagtctaacggc
tcttcttcacaggcaagcatatgtgcgggtagtttggcactaatggacgcaggggtacct
attaaggctcacgtagcaggtatcgcgatggggcttgtaaaagatggcgaagattatgca
attctaacggatatccaaggtatggaagatcatttgggagacatggactttaaagttgca
ggtacaagtgaaggaattacggctttacaaatggatatcaaaatccagggaattacaaaa
gaaattttggaagaagcccttatccaagcacgtaaagcacgtttagaaattttagagcac
ttgaattctgttctttcagaacccaaaacagaactttctgcatatgcacctaagattgaa
atgattaaaattaaacctgaaaaaattaaagtagtcattggtaaaggcggagacaccatc
aatggaatcattgaagaaactggcgtgaaaatcgacattgatcaagatggaaatgtcagc
attgcttcctctgataaaacaatgattgaaaaagccaaaaagattattgaagagttgact
catgatgtaaaagctggtgaagtttatgaaggaactgtaaaacgtgttgaaaaatttggt
gcctttgtagaaattactaaaggaaaagatggtttggttcatatatctgaacttgcaaat
gagcgcgtacgtgaagtcgaagatgtagtagctgtcggagataaagttcaagtgaaagtt
ttagagattgataagcaaggaagaattaatctttctcgtaaagctttgttaagtaaagta
gaaaaaacagaaaattcaaaataa
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