Jeotgalibaca sp. MA1X17-3: LZ578_11755
Help
Entry
LZ578_11755 CDS
T08634
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jem
Jeotgalibaca sp. MA1X17-3
Brite
KEGG Orthology (KO) [BR:
jem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jem03016
]
LZ578_11755
Enzymes [BR:
jem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LZ578_11755
Transfer RNA biogenesis [BR:
jem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LZ578_11755
Prokaryotic type
tRNA splicing ligases
LZ578_11755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4899
Motif
Other DBs
NCBI-ProteinID:
UJF15613
LinkDB
All DBs
Position
complement(2363877..2364848)
Genome browser
AA seq
323 aa
AA seq
DB search
MDVQDELKLTGTFADATVFTTNINQETIDQITRLLNHPFSEGIKIRIMPDTHIGKGAVVG
TTMTYHDKMVPDVVGVDIGCGMYLAKLSKTKWNESDFKRLDQVINDKIPSGSGIRKKSHP
LLKEINLDDVRAPIRRKNRSALAIGSLGGGNHFIELDKDEEENHYFVIHSGSRALGHDVA
SYYQKKAVQQWKERGNENEEGHFVDSEFAYLEEEDMEDYLHDVQICQRFAHLNRKAMMEE
IIQKMKVEIISTFDTIHNYVDVPNQIIRKGAISAHEGEEILIPINMRDGSILAVGKGNPD
WNNSAPHGAGRLLSRTQAKKNYG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggacgtacaggacgaactaaaactgactgggacattcgccgatgctacagtttttact
accaatattaaccaagaaaccattgatcagattactagattattaaatcatcctttttca
gaaggaatcaaaattcgaattatgccagatactcatattggaaaaggggcagtggtaggg
acaaccatgacgtatcatgataaaatggttcctgatgtggttggtgtagatattggatgc
ggaatgtatctagcaaaactcagcaaaacgaaatggaacgaatctgattttaagagattg
gatcaagtaattaacgataaaattccaagtggaagtggcatccgtaaaaagagtcatccc
ttgttgaaagaaattaatttggatgatgttcgggccccgataagaagaaaaaatcgaagc
gcattagcgattggatctttaggaggtggcaatcattttattgagctggataaagatgag
gaagaaaatcactatttcgtgattcactctggttcgcgcgcattaggccatgatgttgca
agttattatcaaaagaaagcagttcaacagtggaaagaaagaggcaatgaaaacgaagaa
ggacattttgtcgattctgaatttgcttatttagaagaggaggacatggaagattacctt
catgacgttcaaatttgtcaacgatttgctcatctaaatcgaaaagcaatgatggaagaa
attatccaaaagatgaaagtagaaattatttctacttttgatacgattcataattatgtc
gatgtgcctaatcaaatcattcgtaaaggggccatctcggctcatgaaggagaagagatt
ttaatcccgataaatatgcgagatggtagcattttagccgttggaaaaggaaatccagat
tggaataattctgccccacatggagcaggaagattactatctcgtacgcaagctaaaaaa
aattacggatga
DBGET
integrated database retrieval system
