Jeotgalibacillus malaysiensis: JMA_15170
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Entry
JMA_15170 CDS
T03570
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
jeo
Jeotgalibacillus malaysiensis
Pathway
jeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMA_15170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jeo03019
]
JMA_15170
Messenger RNA biogenesis [BR:
jeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JMA_15170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AJD90834
UniProt:
A0A0B5AS41
LinkDB
All DBs
Position
complement(1409146..1410813)
Genome browser
AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
EKNIDKIKGLFITHGHEDHIGGIPYLLRQVNVPVYGGKLALGLLKNKLEEHGLLRSTRLH
PIDEDDVIKFRKTAVSFFRTTHSIPDSFGVVVKTPPGNIVHTGDFKFDFTPVGDPANLTK
MAEIGKEGVLALLSDSTNSEVPNFTLSERKVGESIDDIFQTVNGRIIFATFASNIYRLQQ
VVESAVKYGRKVAVFGRSMDNAINIGHELGYINAPKDTFIDAHTLNRMPADKVVILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTISVNRTINLLYRAGANVIHGSL
NNIHTSGHGSQEEQKLMLRLIKPKFFMPIHGEYRMQKMHASLAVDCGVPEENCFLMENGD
VLALGSNEASVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVVVVVSLNLNDHKI
ASGPDLISRGFVYMRESGELINQAQHLLYKHLNKVLANKTSQWSEIKNEITDTLEPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaaaatgaccagactgctgtgtttgccctcggtggtcttggagaaatc
ggaaagaacacatacggcgtacaatttcaggatgaaattattctgatcgatgccggtatc
aaatttcctgaagatgaacttcttggaattgattatgttattccagactacacttactta
gaaaaaaatattgataagatcaaaggcctttttattactcacggccatgaagatcacatc
ggcggaataccttatttactccgacaggtaaatgttcctgtatacggcggaaagcttgcg
cttggacttttaaagaacaagcttgaagaacatggtcttttaagatctacacgtcttcac
cctatcgatgaagatgatgtgattaaattccgtaaaacagcggtaagctttttccgcaca
acccacagtattcccgattcttttggtgtagttgttaaaacaccacctggcaatatcgtg
catacaggagatttcaaatttgatttcacgccggttggagaccctgcaaacctgacgaaa
atggctgagatcggtaaagagggcgttcttgctctattatcagacagtacaaacagtgaa
gttccgaattttacactttcagaacgaaaagtcggtgaaagtattgatgatatcttccag
actgtaaatggacgtattattttcgcaactttcgcatcaaatatttatcgcttacagcag
gttgtagaatcagctgttaagtacggtcgcaaagtagctgtatttggacgcagtatggat
aatgcaattaatatcggtcacgaactcggttatattaatgcaccgaaagatacgtttatt
gatgcacatacactgaacagaatgcctgcagataaagtcgttattttatgtacaggaagc
cagggcgaaccaatggccgccctttcaagaattgctaatggtacccaccgccagatccag
attattccgggagatactgttgtattctcatcttcaccaattccgggtaacacgatcagc
gtaaaccgtacaattaacctgctttaccgcgctggtgcaaatgtcattcatggatcactt
aacaatatccatacatccggtcacggttcacaggaagagcagaaactcatgctccgtctg
atcaagccgaaattcttcatgccgatccacggtgagtacagaatgcaaaagatgcacgct
agcctcgcagttgattgcggtgtaccggaagaaaactgcttcctgatggaaaatggtgat
gtactggcacttggcagtaacgaagcatctgttgcaggaaaaatcccttcaggtaatgtg
tatatcgatggcagcggaatcggtgatatcggaaacattgtattaagagaccgtcgcatt
ttatctgaagaaggccttgtggttgttgtagtgagtttaaacctgaatgatcataaaatt
gcttcaggacctgatttaatctcacgcggatttgtctatatgagagagtccggcgaattg
attaatcaggcacagcaccttctttataagcatttaaataaagtgcttgcgaataagaca
agccagtggtcagaaattaaaaatgaaattaccgatacactagagcctttcttatacgaa
aagactaaacgtcgtccaatgatcttaccaattattatggaagtgtga
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