Jeotgalibacillus malaysiensis: JMA_34160
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Entry
JMA_34160 CDS
T03570
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jeo
Jeotgalibacillus malaysiensis
Pathway
jeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMA_34160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jeo03019
]
JMA_34160
03009 Ribosome biogenesis [BR:
jeo03009
]
JMA_34160
Enzymes [BR:
jeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JMA_34160
Messenger RNA biogenesis [BR:
jeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JMA_34160
Ribosome biogenesis [BR:
jeo03009
]
Prokaryotic type
rRNA helicases
JMA_34160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Vps39_1
MshEN
Motif
Other DBs
NCBI-ProteinID:
AJD92733
UniProt:
A0A0B5AVV3
LinkDB
All DBs
Position
complement(3232463..3233896)
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AA seq
477 aa
AA seq
DB search
MTNTWQQFNLSPSILEALEKLSYTAPTEVQEQVIPAIKAGHDLMAKAQTGSGKTAAYAIP
ISDKVVWEENKPQALIITPTRELADQVRLDALAIGRFKRLKAAALYGRQPFAKQKLELKQ
KTHIISGTPGRLLDHLEKGTLDPSILKYVIIDEADELFNRGFIEQVEAIMAFMPKERLTA
LFSATFSEEVESLAAKWLKTPERFEIASQHKVEDLIQHYYMKSEEEQKFELLKQVTMSEN
PDTCMIFCRTQDRTDELTERLDRAGYSCDKIHGGMVQEERFDVMNEFKRGDFRYLIATDI
AARGIDVANVSLVVNYDLPLELPAYTHRSGRTGRAGQNGKVVSFVETGREDDRLEAIIEY
TNANLIELHSVLPADVGAFWSKMEEQQERKTAAIEKVSEDILKIYVNGGKKKKLRAGDFV
GTITAIDGVTADDIGIITIEPTCSFIEIHNGKGHKVISALKETTIKGKKLKVYPAKK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacacctggcaacaatttaatctcagcccttctattttagaagcacttgagaag
ctttcatatacagcaccaacagaagtacaggagcaggtcatccctgccataaaagccgga
catgacctgatggcaaaagcgcagacaggaagcggtaaaacagctgcttatgccattccg
atcagcgataaagtcgtctgggaggaaaataaacctcaggcactgatcatcaccccaaca
cgtgaactggcagaccaggtccgccttgatgcactggcaatcggccgtttcaaacgtcta
aaagcagcagcactctatggaagacagccttttgcgaaacaaaaacttgaactcaagcaa
aaaacacatattatatccgggacacccggcagactgctcgatcatctggaaaaaggtacg
ctggatccttctatactaaaatatgtcatcattgatgaagcagatgaactgtttaacaga
ggatttattgaacaggttgaagcaattatggccttcatgccaaaagagaggctcacagcg
ctcttctcagcgactttctctgaggaagtagagtcattggctgctaaatggctaaaaacg
cctgagcgcttcgaaatcgcttctcagcataaggtagaagatctgattcagcattactat
atgaaatcagaagaagaacagaaatttgagctgttaaagcaggtaacaatgagcgagaac
cctgatacatgtatgatcttctgccgtacacaggatcggacagatgaattaacagagcgg
ctcgaccgcgcgggatattcctgcgacaaaatccatggcggcatggttcaggaagagcgc
tttgacgtgatgaatgaattcaaacgcggagacttccgttatcttattgcaacggatatt
gcagcacgcggaattgacgtagccaacgtatcattagttgtaaactatgatctgccactc
gaactgcctgcatatacgcacagaagcggcagaacgggcagagctggtcagaacggtaaa
gtagtctcgtttgttgagacaggccgggaagatgaccgtctggaagccattatcgagtac
acaaatgctaatctgattgaacttcattccgtactacctgctgacgttggtgctttctgg
tctaaaatggaggagcagcaggaacgtaagacagctgcgattgaaaaagtaagtgaagat
atactgaagatttacgtgaatggcggtaagaagaaaaagctgagagcgggggattttgtc
ggtaccattacagcgattgatggtgtgacggcagatgacattggtattatcacgatcgaa
ccgacctgctcatttatcgaaattcataatggtaaaggtcataaggtaatcagtgcttta
aaagaaacgacgattaaaggcaaaaagcttaaggtatatcctgcgaagaagtag
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