Jeotgalibacillus malaysiensis: JMA_38210
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Entry
JMA_38210 CDS
T03570
Name
(GenBank) RTCB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jeo
Jeotgalibacillus malaysiensis
Brite
KEGG Orthology (KO) [BR:
jeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jeo03016
]
JMA_38210
Enzymes [BR:
jeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JMA_38210
Transfer RNA biogenesis [BR:
jeo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JMA_38210
Prokaryotic type
tRNA splicing ligases
JMA_38210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJD93139
UniProt:
A0A0B5AYS5
LinkDB
All DBs
Position
unnamed:complement(81791..82999)
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AA seq
402 aa
AA seq
DB search
MQTNQNVVELQGKHNTAKVFTHNVDEVTVGQVIGMLNEPFAEGSQVRIMPDCHAGKGSVV
GTTMTITDKVVPNLVGVDIGCGVLVTRIKASKDEIDFQQLDDVINKHVPSGMSVRSKAHR
FHKEVPFDKVRAPFNRERAEKSIGTLGGGNHFISLEEHDGAIHILIHSGSRNIGKQVAEY
YQDVAFKRLSNQSDKTKEVIDQLKSEGRHHEIQAVIAKMKSERPVVNKDLAFVTGQDMDD
YLNDLGVAQQFAALNRKAMVDEIIQNMGWEVEEQFDTIHNYIDLENMILRKGAISAQAGE
KVVIPINMRDGSIIAIGKGNPDWNFSGPHGAGRIMSRSKAKQQVTLEEFQDSMEGIWSTS
VVESTIDESPFAYKPIDEIMENIQDSVDIQFVVKPIYNFKAK
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaaatcaaaacgtagtcgaacttcaaggaaaacacaacacagcaaaggtattc
actcacaatgtcgatgaagtgacggttggtcaggtcattgggatgttgaacgagccgttt
gcagaaggaagccaggttcgaattatgcctgactgccatgcaggtaaaggctctgtcgtt
ggaacaaccatgacaattactgataaagtcgttccgaatctcgtcggcgtagatattgga
tgtggtgttttagttacccgaatcaaagcatcaaaagacgaaattgatttccaacaattg
gacgatgtgattaataagcatgttccaagtggaatgagtgttcgttcaaaggcacatcgt
ttccataaggaagtaccttttgacaaagtacgtgctccgtttaatcgtgagcgagctgag
aagtcaatcgggacactcggagggggaaatcattttatttccctagaagagcatgatggt
gcgattcacatcttgattcactctggtagccgaaatattggaaagcaggttgctgaatac
taccaagatgtagcattcaagcgtctgtcgaatcaatcggataaaacgaaagaagtcatt
gaccaattgaaatctgagggtcgtcatcatgagattcaggctgtgattgcgaaaatgaag
tcagaacgtccggttgttaataaagaccttgcttttgtaacaggtcaagatatggatgat
tacttgaatgacttaggcgtggctcaacaatttgccgcacttaaccggaaagcaatggtt
gatgaaatcattcaaaacatgggatgggaagtcgaagaacaatttgacacaatccacaat
tacatcgaccttgagaatatgattctccgaaaaggagctatctccgctcaggctggtgaa
aaagtggttatcccaatcaacatgcgtgatggttcgattattgcaattggcaaaggaaac
ccagactggaacttctcaggtcctcatggagctggtcgcatcatgtcacgttcaaaagca
aaacagcaagttacgcttgaagaatttcaggattcaatggaagggatttggtcaacatct
gttgtcgaatcaacaattgatgagtcgccatttgcatacaaaccgattgatgaaatcatg
gagaacatccaagattcagtcgatatccagtttgttgtaaagccgatttataactttaaa
gcgaagtaa
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