Jeotgalibaca sp. PTS2502: BW721_04415
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Entry
BW721_04415 CDS
T04689
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
jep
Jeotgalibaca sp. PTS2502
Pathway
jep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW721_04415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jep03019
]
BW721_04415
Messenger RNA biogenesis [BR:
jep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BW721_04415
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
DUF3804
Motif
Other DBs
NCBI-ProteinID:
APZ48985
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Position
complement(904828..906504)
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AA seq
558 aa
AA seq
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MSEIKIIPLGGVRENGKNMYVVEVDDLIFVLDCGLMYPDNELLGIDVVIPDFTYLEENKN
RIAGIFLTHGHEDAVGALPYFLENIDAPVFGTELTIELAKISVKSTGLNPNFNNYHVINE
KTEIEFDNVTVKFFRTTHSIPDSVAICLDTQDGTIVYTGDFKFDQSASDMYKTDFAAISL
IGQKNVLALMSDSSDAESYVENVSDMRVTEEIIDTFNNAEGRVIVSCVASNVMRIQQVFD
AAHQTKRKIFMTGSKLVQVVDTAINLGKLILPSKNVIVTEKNLDQYSDDELVILETGQSG
EPFEALQRMSKGKHKQVNIKDGDLVYITTTPSTSMEKVVGRTKNMIYGAGGSVKEISDTF
KVSGHATPNDLKLMMNLLHPTFFIPVQGDYRVQAAHAELAHEVGISYKNIFIPGKGDVIE
YKDGRMRMAGQVAAGNVLIDGIGVGDIGNIVLRDRKLLADDGVFIAVVTISRRQGRIVSG
PEIISRGFVYMKASEDLIKESTEITKKVVEDNLENKDFEWSTLKQEIRDSLSRYLFDKTK
RRPVILPIIMEASSYLKK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaataaaaatcattccgttaggtggagtccgtgagaacggaaaaaatatgtat
gtcgtcgaagtagacgatttaatttttgtattagattgtggattaatgtatccagataat
gaattattaggtattgatgtggtgattccagactttacctatttagaagaaaataaaaac
cgtattgctggtattttcttaacgcatggtcatgaagatgcggttggtgcattgccttac
ttcttagaaaatattgatgcaccagttttcggtacagagctaaccatcgaattagcgaaa
atttcagtgaaaagtacaggtttgaatccaaatttcaataactaccatgttattaatgaa
aaaacagaaattgaatttgataatgtgacggttaaattcttccgtacaacacattctata
ccggattcagttgctatttgtttggatacacaagatggcactattgtttacacgggtgac
ttcaagtttgatcaaagtgcttctgatatgtataaaactgactttgcagcgatttcttta
attggtcaaaaaaatgtcttagcattgatgagtgattcaagtgatgctgaatcttacgtt
gaaaatgttagtgatatgcgtgttacggaagaaatcatcgacacctttaataatgcagaa
gggcgtgttattgtttcttgcgtagcaagcaatgtgatgcgtattcaacaagtttttgat
gcagctcaccaaacgaaacgcaaaatctttatgacaggcagcaaactagttcaagtggtt
gatacagctattaacctaggtaaactaatattaccatctaaaaatgttattgtaacagag
aaaaacctagatcaatattcagatgatgaactagttattttagaaacaggacaaagtggg
gaaccctttgaagcactgcaaagaatgtcaaaaggtaaacataaacaagtcaacattaaa
gacggcgatttggtttatattacaacaacaccatcaacatcgatggaaaaagttgtcgga
cggactaaaaacatgatatacggtgctggaggaagcgtaaaagaaatttctgatacgttt
aaagtatctggccatgctacaccaaatgacttgaagttaatgatgaatttgctacatcca
actttctttatacctgtccaaggtgactaccgtgttcaagcagctcatgctgaattggcg
catgaagtgggtatttcttataaaaacatctttattcctggtaaaggcgatgtgattgaa
tataaggatggtcgtatgagaatggcaggtcaggtagcagcagggaatgtcttgattgat
ggtattggcgtaggcgatattggaaatattgtcttaagggaccgtaaattattggcagat
gatggcgtatttattgcagttgtgacgatttctcgtcgtcaaggcagaatcgtttcaggt
ccagaaattatctctcgaggttttgtttatatgaaagctagtgaagatttaataaaagaa
agtaccgaaatcacgaaaaaagtagtagaagataatctagaaaacaaggattttgaatgg
tctacgttaaaacaagagattcgtgattcactgagtcgttacttgtttgataagactaaa
cgtcgtcctgttattcttccgatcattatggaagcatctagctatttaaaaaaataa
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