Jeotgalibaca sp. PTS2502: BW721_09660
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Entry
BW721_09660 CDS
T04689
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jep
Jeotgalibaca sp. PTS2502
Pathway
jep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW721_09660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jep03019
]
BW721_09660
03009 Ribosome biogenesis [BR:
jep03009
]
BW721_09660
Enzymes [BR:
jep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BW721_09660
Messenger RNA biogenesis [BR:
jep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BW721_09660
Ribosome biogenesis [BR:
jep03009
]
Prokaryotic type
rRNA helicases
BW721_09660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
APZ49876
UniProt:
A0A1U7EDU5
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All DBs
Position
1918433..1920019
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AA seq
528 aa
AA seq
DB search
MKFSELGLSPELLKSVEAMGFEEATPIQEQTIPLALTGLDVIGQAQTGTGKTAAFGLPML
EKIDRNNRTIQGLVIAPTRELAIQTQEELYRLGREKRITTQVVYGGADISRQIRGLKNNP
HIVVGTPGRLLDLIRRKALKLQNIETLVLDEADEMLNMGFLEDIEAIISETPSETRQTLL
FSATMPPAIKRIGVQFMKNPEHVQIKASEMTANLIDQYFVKCKDFEKFDNMTRLFDVQNP
ELTIIFGRTKRRVDELAKGLELRGYRAEGIHGDLTQKKRMSVLNDFKNGNLDILVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFVTPNEMDYLRTIEKLTR
KEMSPLRPPSDKEAMVGQLKNAIDTIEDIIKDTEADKYDNAIKHLLDKYTAEELAAAFLK
SQTKEASEVPVNITPERPLPSRKGGKGGYRGKSGGGYKGKGGGRSNDRRDRGDRNDRGGN
RSRNNEGSKNRSGGGKRRDDRKRDDRPSSGYKGQNKGKKPGFTIRNND
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagaactgggattatctcccgaactattaaaatcagttgaagctatgggc
tttgaagaagcaacaccaatccaggaacaaacaattccgttggcactaacagggcttgac
gttattggtcaagcacaaacaggtacaggtaaaactgctgcatttggtctaccaatgctt
gaaaaaatcgaccgtaacaaccgcactattcaagggttagtaattgcaccaactcgtgaa
cttgctatccaaactcaagaagaactataccgcctaggtcgcgaaaaacgtattaccaca
caagttgtttacggtggagctgatattagccgccaaattcgtggcttgaaaaacaatcca
cacatcgttgttggaacacctggtcgtctattagaccttatccgtcgtaaagctcttaaa
ttgcaaaatatcgaaacattagttttagacgaagcagacgaaatgctaaacatgggcttc
ttggaagacatcgaagcaattatttcggaaacaccatctgaaactcgtcaaacactattg
ttctcagctacaatgccaccagcaatcaaacgtatcggtgtacaatttatgaaaaatccc
gagcacgttcaaattaaagcatcagaaatgactgctaacttgatcgatcaatatttcgtg
aaatgtaaagatttcgagaaattcgataacatgactcgtttattcgatgttcaaaaccca
gaattgacaattatcttcggacgtacaaaacgtcgtgttgatgagttagctaaaggatta
gaactacgtggttaccgcgctgaaggaattcacggtgacttaacgcagaaaaaacgtatg
agcgttctaaacgacttcaaaaatgggaatctagatattcttgttgcgactgacgttgca
gctcgtggactagatatttctggtgttactcacgtttataactacgatattcctcaagat
ccagagagctatgttcaccgtattggtcgtacaggccgtgctggtaaagaaggtatgtca
gtaacatttgttacaccaaacgaaatggactacctacgtacaattgaaaaattaacacgt
aaagaaatgtcaccattacgtcccccttcagataaagaagcaatggttggacaattgaaa
aatgcgattgatacaatcgaagacattatcaaggatacagaagctgataaatacgataat
gccattaaacatttattggataaatatacagcagaggaattagctgctgcattccttaag
agccaaacaaaagaagcgtctgaagtacctgtaaatatcactccagaacgtccattacca
tctcgtaaaggtggcaaaggcggttaccgtggtaagagcggtggcggatataaaggtaaa
ggcggcggccgttctaatgaccgtcgtgacagaggcgacagaaatgatagaggcggcaac
cgttcacgtaacaatgaaggtagcaaaaaccgttcaggcggcggcaaacgtcgtgacgat
cgcaaacgcgatgaccgtccatcatctggttacaaaggccaaaacaaaggtaaaaaacca
ggatttacaattcgtaacaacgactaa
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