Jeotgalibaca sp. PTS2502: BW721_10835
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Entry
BW721_10835 CDS
T04689
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jep
Jeotgalibaca sp. PTS2502
Pathway
jep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BW721_10835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jep03400
]
BW721_10835
Enzymes [BR:
jep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BW721_10835
DNA repair and recombination proteins [BR:
jep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BW721_10835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
APZ50075
UniProt:
A0A1U7EEH6
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All DBs
Position
2167029..2170550
Genome browser
AA seq
1173 aa
AA seq
DB search
MKDIQAYLKRSALIADVVSHAREAGNQLVTGISGSARNLLTTMIYDELDGPIVVWAANLL
QATQLYEDISQINPMIPTFLFPVEESLAVEVAFSSPEYRSQRVEALHFLESGEKGIVVVP
TAGFKKLLAPVSIWRDHVLTFDIGNERDFEQLPEKLVAMGYERESMVASPGEFSVRGDIM
DIYALNEEYPIRIEFFGSEVDRMRFFEPTTQKSFDEAVESVMVLPAQDTIFPPYILQEQV
EEIEKKVKKAEKSIKHEDVKKRLTVFFNDFIEKAKLGELPQNPKMYTSLFYPQMTTIMDY
VSKDTLIVMDEYGRTLESERTQNIEAADWEELKIGEGVLLPKQQMTADIRDVVKQSEHRK
LFYSLFQKGLGNSRFTAVHPMQYRGLVQFFGQMPMVKSEVDRWLKQDATVFMVVPDKDRA
EKVHQIFLDFGIESVIIGQDNFIENHVNLIVGGMATGFELPMEKLVVMTEKELFNKATKR
QPSRQKMSNAERLKSYTELSTGDYVVHVNHGIGKYTGMETIDVDGVNQDYISILYQDGAK
LFIPVTQLHLVQKYVSSESKTPKVNRLGGTEWAKTKKKVASRVEDIADELIELYAKRESE
KGYAFPPDNQDQVDFENRFPYTETDDQLRSIEEIKKDMQKEKPMDRLLVGDVGYGKTEVA
MRAIFKAVLEGKQAAFLVPTTILAQQHYESLVQRFEDLPFEIGLLSRFRTKKQQEETIEG
IRKGSVDIIVGTHRLISKDVVFFDLGLLVVDEEQRFGVKHKERLKALKSTVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEQNMAAVRDGIEREMARGGQAFYVYNR
VDTIERKADEIRVLVPDCRVGVAHGQMTEVQLENIMMDFVEGVYDVLVTTTIIETGVDIP
NANTLFIENADYMGLSQLYQLRGRVGRTNRIAYAYLMHQRDKILSEVSEKRLQAIKDFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSEMLSEAVERKRGKGSRRKQVNV
EIDLAINAYIPATYIEDERQKIDMYKRIQQLKNEDDFYEIQDDFQDRFGDLPEEVTYLAQ
VGLIRHYAELAEAEQLKRQGDIVHITFDKEGTKRLQGVAIFEALSSIPLRAQVNMKKDQL
VVSIQIHKVAIPAWMDHLKAFLEASVAEQKEES
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatatacaagcctatttaaaacgatcagctttgatagctgatgttgtgagtcat
gctagagaagcaggtaatcaattagtaacaggtatatccggttcagcaagaaatttacta
acgactatgatctatgatgagttagacgggccgattgtcgtatgggcagctaacttgtta
caggcaacacaactatatgaagatatcagtcaaattaatccaatgattcccacctttcta
tttcctgtggaagagtcactggctgtagaagtagccttttcttcgcctgaatatcgtagt
cagcgggttgaagcccttcactttttagaaagtggtgaaaaaggaattgttgttgttcca
acagcaggatttaaaaaattattagcacccgtttcaatttggcgtgatcacgtactaacc
tttgatattgggaatgaacgtgactttgaacaactgccagaaaaattagtcgcaatgggt
tatgaacgcgagagtatggtagcttcaccaggtgaatttagtgttcgtggtgacattatg
gatatttatgcattgaatgaagaatatccaatacgaatcgaattctttggctctgaagtt
gatcgcatgcgcttttttgaaccgacaactcagaaatcctttgatgaagctgttgaatca
gtgatggttctgccagcccaagatacgatttttccgccgtatatattacaagagcaagta
gaagaaattgaaaagaaagttaagaaagctgaaaaatcaatcaaacatgaggacgttaaa
aaacgactaactgttttctttaatgattttattgaaaaagcaaaattgggtgaattaccg
caaaatccaaaaatgtatacctccttattttatccacaaatgacaaccattatggattat
gtgtctaaagatactttaattgtaatggatgaatatggcaggacgttagagagcgaacgc
actcaaaatatagaagcggctgattgggaagaattgaagattggtgaaggggtcttgttg
ccgaaacaacagatgacagctgatattcgtgatgttgtcaaacaaagtgagcaccgcaaa
ctcttttattctttattccaaaaagggttagggaatagtcgctttactgctgttcacccg
atgcaatatcgtggcctcgtccaattctttgggcaaatgccaatggttaaatcagaagta
gatcgctggctcaagcaagatgctaccgtatttatggttgttcctgataaggatcgtgct
gaaaaggttcatcaaattttccttgattttggcatcgagagtgtcattattggtcaggat
aactttatcgaaaatcacgtgaatcttatcgtcggtgggatggcaacgggctttgaactg
ccaatggaaaagctagttgtaatgactgaaaaggaactctttaataaagcaacgaaacgt
cagccaagtagacaaaagatgtcgaatgcggaacgtttgaagagttatacagagctatct
actggtgattatgtggtacatgtcaatcacggaattgggaagtacacgggcatggagacg
attgacgttgatggtgttaaccaagactacatttcaattctctatcaagatggggctaag
ctctttattccggtgactcagctacatttagttcaaaaatatgtgtcttcagagtctaaa
acacctaaagtcaacaggctaggtggtaccgagtgggcgaaaacgaaaaagaaagtcgct
tcaagagtagaagacattgcggacgagttgatagagctctatgctaaacgcgaatcagaa
aaaggctatgccttcccaccagataatcaagaccaagttgattttgaaaatcgtttccct
tatacagaaacagatgaccaattgagaagtattgaagaaatcaaaaaggatatgcaaaaa
gaaaaaccaatggatcgtctcttagtcggagatgttggatatggaaaaacagaagtggcc
atgcgtgctattttcaaagctgttctagaaggaaaacaagcagcttttctggtgccaacg
actattttggcacaacagcattatgaatcgttagtacaacgctttgaggatttaccattt
gagattggtcttttaagtcgcttccgtacgaagaaacagcaagaagaaaccattgaaggt
attcgtaagggcagtgtggatattattgtgggaacgcaccgtctcatttcaaaagatgtt
gtcttttttgacctcggtttattagtagtcgatgaagagcaacgtttcggtgtcaaacat
aaagaacgcttgaaggcgctgaagtcgacagtagatgtcttgaccctaacggcaacgccg
attccgcgtaccttgcatatgtctatgttaggtgtccgcgacttgtcggttattgaaaca
ccacctgctaaccgctatcctgtccaaacctacgtaatggagcaaaatatggctgctgtt
cgcgatgggattgaacgagaaatggcaaggggcggccaagctttttatgtctataatcgt
gtcgataccattgaacgtaaggcggatgaaatccgagtactcgttcctgattgcagagta
ggtgtggcgcatgggcaaatgacagaagttcaactagaaaacatcatgatggactttgta
gaaggtgtttacgacgtactcgttaccacaactattattgaaacaggtgtggatattcca
aatgccaatacgctctttattgaaaatgctgactacatgggcttgtcccaactttatcaa
ttaagaggacgagtagggagaacgaatcggattgcctatgcttacttaatgcaccaacgc
gataaaatattaagtgaagtaagtgagaaacgcttgcaagctattaaggactttacagaa
ttagggtctggattcaaaattgctatgcgtgatttgtctattcgtggagcaggaaatctg
ttaggagcccaacagcatggctttatcgattcagtcggatttgatttgtactcagaaatg
ctgagcgaagcagtagaacgcaagcgtggcaaagggtcacgtcgcaagcaggtaaatgtt
gagattgatttagctattaatgcctatattccggcaacctacattgaagacgaacgtcaa
aaaattgatatgtataaacgcatccaacaactgaaaaatgaagatgatttctacgaaatt
caagatgacttccaagaccgttttggtgatttaccggaagaagtgacctatctcgctcaa
gtgggcttgattcgccactatgcagaattagccgaggcagaacagctaaaacgtcaaggc
gatatcgttcatattactttcgataaggaaggaacgaaacgactgcaaggagtagcgatt
ttcgaagcgcttagcagtatccctttacgtgcacaagtgaatatgaaaaaagaccaatta
gtggtatctattcaaattcataaggttgctattccagcatggatggatcatttgaaagca
ttcctagaagcaagcgtcgctgagcaaaaggaagaaagttga
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