Jeongeupia sp. HS-3: JHS3_06520
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Entry
JHS3_06520 CDS
T08604
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
jes
Jeongeupia sp. HS-3
Brite
KEGG Orthology (KO) [BR:
jes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jes03019
]
JHS3_06520
Enzymes [BR:
jes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JHS3_06520
Messenger RNA biogenesis [BR:
jes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JHS3_06520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_25
ABC_tran
NACHT
T2SSE
TsaE
SRP54
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BCL74916
UniProt:
A0A7I8E6X3
LinkDB
All DBs
Position
complement(715685..719506)
Genome browser
AA seq
1273 aa
AA seq
DB search
MLAKKLATLDARRGSGKPIDRIEADLERELTAAAAKTARRRERLPVPEFDESLPVNQRRD
EIRAAIAANQVVILCGETGSGKTTQLPKICLELGRGINGLIGHTQPRRLAARSVATRIAQ
ELKSELGSIVGFKVRFTEKSSGDSYIKLMTDGILLAETLSDRYLTAYDTIIIDEAHERSL
NIDFLLGYLKQLLPSRPDLKVIVTSATIDADRFSTHFDGAPVLEVSGRTYPVEVRYAPLE
SRDEDDAEIEMEEAIVAEVEHLWRHDGAGDVLVFLPGEREIRETAEAFRKAKLRDAEVIP
LFARLSNEDQQRIFRPGNGRRVVLATNVAETSLTVPGIRYVIDSGHARVNRYSTRAKVEQ
LLVEKISQASARQRAGRCGRVSSGVCVRLYSEEDFNLRSPFTDPEIIRSSLAGVILRMAA
LKLGKVDAFPFLEAPSSRLITDGYQQLHELGAVDDQDELTPVGKQLARLPVDPRLARMLL
AGHEQACLHEVLIIASGLSVQDPRDRPFDARDAADRAQAKFVDEKSDFLTYLNLWAFFEK
AVAEKTSNKQLVEVCHAHFLSHIRLREWRDLYRQLADIVDDLGWRKTESAGTFEQIHKAL
LTGLLGNLGFKQPENDEYLGARGIKFNIFPGSALKKSRPKWVVAGELVETTKLYARGVAA
IESEWVEKIAAHISKKQYFEPHWEKAGAQVMASERVTLYGLPIVNRRRVHYGRINPVEAR
EIFIREALVRFNYNTKAKFFDQNLELLLEIEELEHKARRQDVLVDEEALYRFFDERIPAD
IVNGASFEAWRKKAEQDNPQLLYLTREFLMSHTADAVTEDQFPAFFKLAEAKLPLAYRFE
LNHPLDGVTLTLPLHQLNRVNHAVFDWVVPGMLREKVTLLVKSLPKAIRRVCVPVPEFAT
RMLGELDKADREAPLLPQLAHAVNRGTGLTVSADEFDPGVLPAHLLMNFRVVDDAGQELA
SGRDLIAIRAQLGEAAQLTFRDDADDNGIEKSGIVKWDFGDLPEQLTFKRHGRKLTGYPA
LVPDEDTCAIRLFDTAHAAAEAHRQGVVQLLRFELKEHVKQLEKSVPNFQQHAIALRATQ
NADELMTDIVAAICDRAFIGDDDAPRSKKEFDNQKSRAKVRLPSVRDAVVRTLAAVVAEY
VPMVLAAGKAGNISQQLNQQLGKLVSKGFLAATPWEQLPRLPLYLKAMRVRLEKRVANPQ
RDGQRNAEITELWLRWESELDKWQREGRDTTPLLPFRWMIEELRISLFAQELKTPYPVSL
KRLNKVWADMTRR
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
ttgctggcaaaaaaactcgccacgctcgatgcccgccgcggtagcggcaaaccgatcgat
cgcattgaggccgaccttgagcgcgagctgaccgcagccgcggccaagaccgcgcgccgg
cgcgaacggctgccggtgcccgagtttgatgaatcgctgccggtcaaccagcgtcgcgat
gagatccgcgcggcgattgccgccaatcaggtagtgatcctttgcggcgaaaccggctcg
ggcaaaaccacgcagctacccaaaatctgcctcgagctcggtcgcggcatcaacggcctg
atcggccacacccagccgcgccggctggccgcgcgctctgtggcgacccgcatcgcgcag
gagctcaaatccgaactcggcagcatcgtcggcttcaaggtgcgcttcaccgagaaatcc
agcggcgacagctatatcaagctgatgaccgacggcattctgctcgctgaaacgctgtcc
gatcgctacctgaccgcctacgacacgatcatcatcgacgaggcgcacgaacgcagcctc
aacatcgacttcctgcttggctatctgaagcaactgctgccgagccggcccgacctcaag
gtcatcgtcacctcggcgacgatcgatgccgaccgtttctccacacacttcgacggcgca
ccggtgctcgaagtctctggccgtacctatccggtcgaagtgcgctacgcaccgctggaa
agccgcgacgaggacgacgccgagatcgagatggaagaagccatcgtcgccgaggtcgaa
cacctgtggcgtcacgatggcgccggcgacgtactggtgttcctgcccggcgagcgcgaa
atccgcgaaaccgccgaagcattccgcaaggccaagctgcgcgacgccgaggtgattccg
ctgttcgcacggctatcgaacgaagaccagcaacgaattttccggcccggcaatggccgg
cgcgtggtgctggcgaccaacgtcgccgagacctcgctcaccgtgcccggcatccgctac
gtgatcgactcgggccatgcccgcgtcaaccgctacagcacgcgcgccaaggtcgagcag
ctgctggtcgagaaaatctcgcaggcgtcggcccgccagcgcgccggtcgctgcggccgg
gtgtcgagtggcgtgtgcgtgcggttgtactcggaagaagacttcaacctgcgctcgccg
ttcaccgatccggaaatcatccgctctagcctcgccggggtgatcctgcgcatggcggca
ctcaagctcggcaaggtcgacgccttcccctttcttgaagcgccatcgagccggctgatc
accgatggctaccagcaactgcacgagctcggcgccgtcgacgatcaggacgagctgacc
ccggtcggcaagcagctggcgcggctgccggtcgacccgcgcctagcgcggatgctgctc
gccggtcacgaacaggcctgcctgcatgaagtgctgatcatcgcctcgggcctgtcggtg
caagacccgcgcgatcggccgttcgatgcccgcgatgccgccgaccgcgcgcaagcgaag
ttcgtcgatgaaaaatccgatttcctcacctatttgaacctgtgggcgttcttcgagaag
gccgtcgccgagaaaacctcaaacaaacagctggtcgaggtctgccatgcgcatttcctc
tcgcacatccgtctgcgcgaatggcgcgatctgtaccgccagcttgccgatattgtcgac
gacctcggttggcgcaagaccgagagcgccggcaccttcgagcaaatccacaaggcgctg
ctgaccgggctgctgggcaacctgggtttcaagcagcccgagaacgacgaataccttggc
gcccgcgggatcaagttcaatatcttccctggatcggcactgaagaaatcgcggccgaaa
tgggtggtcgccggtgaactggtcgaaacgaccaagctgtacgcgcgcggtgttgctgcg
atcgaatccgaatgggtcgagaaaatcgccgcccatatcagcaagaagcagtacttcgag
ccgcactgggaaaaagccggcgcgcaggtgatggcgagcgagcgcgtcacgctatacggc
ctgcccatcgtcaaccgccgccgggttcattacggccggatcaacccggtcgaagcgcgc
gaaatttttatccgcgaagcgctggttcgtttcaactacaacaccaaggccaagttcttc
gaccaaaacctggagctgctgctcgaaatcgaagagctcgaacacaaggcgcgccggcag
gatgtgctggtcgacgaagaagcgctgtatcgcttttttgacgaacgcatcccggccgat
atcgtcaacggcgcgagcttcgaggcatggcgcaagaaggccgagcaggataatccgcag
ctgctatacctgacgcgcgaattcctgatgagccacaccgccgacgcggtgaccgaagat
caattcccggcgttcttcaagctcgccgaggccaagctgccgctggcctaccgcttcgag
ctcaaccacccgctcgacggcgtgacgctgacgttgccgctgcatcaactcaaccgcgtc
aaccatgcggtgttcgattgggtggtgccgggcatgctgcgcgagaaggtgacgctgctg
gtcaaatcgctacccaaagcgattcgccgcgtctgcgtgccggtacccgaattcgccacc
cgcatgctcggcgagctcgacaaggccgaccgcgaggcgccgctgctgccgcaactggcg
cacgcggtgaaccgtggtaccggcctgaccgtgtcggccgacgagttcgaccccggcgtg
ctgccggcgcatttattgatgaatttccgcgtcgtcgacgacgccggccaggaactggcc
agcgggcgcgacctgatcgcgatccgcgcgcagctcggcgaagcagcacaactgacgttc
cgcgatgacgccgacgacaacggcatcgagaagagcggcatcgtgaaatgggacttcggc
gatctgcccgagcagctcaccttcaagcgccacggtcgcaagctcaccggttacccggcg
ctggtgcccgatgaagacacatgcgcgatccggctgttcgataccgcccacgccgcagcc
gaagcacaccggcaaggcgtggtgcagctgctgcgcttcgagctcaaggagcacgtgaag
cagctggaaaaatcggtgcccaacttccagcagcacgcgatcgcgctccgtgccacgcag
aacgccgacgaactgatgacggatatcgtcgcggcaatctgcgatcgcgcctttatcggc
gacgacgacgcaccgcgcagcaagaaggaattcgacaaccagaaatcgcgcgccaaggtg
cgcctgccgagcgtgcgcgatgcggtggtccgcacgctagcggccgtggtcgccgagtat
gtaccgatggtgctggcggcgggcaaggccggcaacatcagccagcaactgaatcaacag
ctcggcaaactcgtgtccaaaggattcctggccgcaacgccgtgggagcaactgccccgc
ttgccgctgtacctgaaagccatgcgggtgagactggaaaagcgcgttgccaatccgcaa
cgggatggccagcgcaacgccgaaatcaccgagctgtggctgcgctgggaatccgagctc
gacaagtggcagcgcgaaggccgcgacaccacgcccttgctgccattccgctggatgatc
gaagagctgcggatctccctctttgcccaagagctgaaaacaccgtatccggtgtcgctc
aagcggctgaacaaggtctgggccgacatgacccggcgttag
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