Jeongeupia sp. HS-3: JHS3_12880
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Entry
JHS3_12880 CDS
T08604
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jes
Jeongeupia sp. HS-3
Pathway
jes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHS3_12880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jes03019
]
JHS3_12880
Enzymes [BR:
jes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JHS3_12880
Messenger RNA biogenesis [BR:
jes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JHS3_12880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
P-loop_SecA
HI1480
Utp25_C
DUF8086
Motif
Other DBs
NCBI-ProteinID:
BCL75552
LinkDB
All DBs
Position
1411103..1412713
Genome browser
AA seq
536 aa
AA seq
DB search
MTFASLGLSDVLVRAVHDAGYNEPTPIQTQAIPAILNGGDLLAGAQTGTGKTAGFLLPIL
ERLAQNPTDHGKIRVLILTPTRELAAQVEESVRVYGKYSDVKSLVVFGGVSINPQIKALK
GKIDILVATPGRLLDHASQKTVNLSHIDTLVLDEADRMLDMGFIHDIKKVLAMLPAKRQN
LLFSATFSDDIKALADKLLDNPALIEVARRNATAETISQKIYPVDRDKKRQLLAHLIKEN
NWFQVLVFTRTKHGANRLAEQLDKDGISSLAIHGNKSQSARTRALTEFKAGTLQVLCATD
IAARGIDIDELPHVVNYELPNVPEDYVHRIGRTGRAGAEGEAISLVCIDEHKLLADIERL
IKREIPREIVVGFEPDPNAKPEPILQGRRGQQQQQPRRGREGGNAGGGQRGGQQRQPRAE
GEAERQPRRQQPQGGSGEQQGKPRPQGQGGKPRSGGQGQGQGARQGQGQGQKRQGGQGQG
QADGNRSPRGNSQGQKRQDSGDNSRWDHQQPASNENTPIAALFSSPRRHGGGGRHH
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcttcccttggcttgagtgacgtactcgttcgtgccgtgcatgatgccggc
tacaacgagccgaccccgatccagacccaggccattcccgccattctcaatggcggcgac
ctgcttgccggcgcccagacgggcacgggcaaaaccgcagggttcctgctccccatcctt
gaacggctggcgcaaaacccgaccgaccacggcaaaatccgtgtactgatcctgaccccg
acgcgcgaacttgccgcgcaagtcgaggaaagcgttcgcgtgtacggcaagtacagcgac
gtcaaatcgctggtggtattcggcggcgtcagcatcaatccgcagatcaaggcgctcaaa
ggcaagatcgacatcttggtcgccacgccgggtcggctgcttgatcacgcgtcgcaaaag
accgtgaacctgtcgcacatcgatacgctggtgctcgacgaagccgaccgcatgctcgac
atgggcttcatccacgacatcaagaaagtgctggcgatgctgccggccaagcgccagaac
ctgctgttctcggcaacgttctcggatgacatcaaggcgctggccgacaagctgctggat
aacccggcactgatcgaagtggcccgccgcaatgccaccgccgaaaccatttcgcaaaaa
atttatccggttgaccgcgacaagaaacgccagctcctggcgcatctgatcaaggaaaac
aactggttccaggtgctggtattcacccgcaccaagcacggtgccaaccgtctggccgaa
cagctcgacaaggatggcatcagctcgctggcgatccacggcaacaagagccagagcgcc
cgcacccgtgcgctgaccgagttcaaggccggcacgctgcaagtgctgtgcgcgaccgac
atcgccgcgcgcggcatcgacatcgacgagttgccacacgtggtcaactacgagctgccg
aacgtgccggaagactacgtccaccgcatcggccgtaccggtcgtgccggcgccgaaggc
gaggcgatttcgctggtgtgtatcgacgagcacaagctgctcgccgacatcgaacgcctg
atcaagcgcgaaatcccccgcgaaatcgtcgtcggtttcgagcctgatccgaatgccaag
ccggaaccgatcctgcaaggccgtcgtggccagcaacaacagcagccgcgtcgtggccgt
gaaggcggtaatgccggcggcggtcaacgcggtggccagcaacgccagccgcgtgccgag
ggcgaggccgaacgccagccacgtcgccagcaaccgcaaggcggcagcggcgagcaacaa
ggcaagccacgtccgcaaggccagggcggcaagccgcgcagcggtggtcagggtcagggt
cagggcgcacgccagggtcagggtcagggacaaaaacgtcagggtggacaaggccaaggc
caggccgacggcaaccgcagcccacgcggcaatagccaaggacagaaacgccaggacagc
ggtgacaattcgcgctgggatcatcaacagccggcgtcgaatgaaaataccccaatcgcc
gccctgttctcgagcccgcgccgtcatggtggcggcggtcgtcaccactaa
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