Candidatus Jettenia sp.: L3J17_15730
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Entry
L3J17_15730 CDS
T07848
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jet
Candidatus Jettenia sp.
Pathway
jet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L3J17_15730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jet03400
]
L3J17_15730 (mfd)
Enzymes [BR:
jet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3J17_15730 (mfd)
DNA repair and recombination proteins [BR:
jet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L3J17_15730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UJS17340
LinkDB
All DBs
Position
3692121..3695372
Genome browser
AA seq
1083 aa
AA seq
DB search
MKLLHQNKQYKEIVSHVLRGDDCSVNGLWGSSANFFITAIANERLKRIEKQPKILLVVPT
LEEAQDDLEDLNTFLQNHVSLFPANESIFPEDFSDNDILAQRIHILKQILHSDSNSRSKL
DIIVSPIQALLQPVPSPQSLSENILCIRKNQEHSRDKLILWLQDHHYQSVSQIENAGEYA
LRGGIVDIFPYASDVPYRIEYFGDEIESIRGFNLESQLSEQDLDTCQILSLDRIHRVAQT
HAAGLESQKTSLLDYLKKDTWIILKEPASLEDRTRKILIDVDNRRTLLTEDEIFGQLSTF
TKIHISKLPFVLDNSNYTFHVKSVNDFPQNIQAIIPELSKITDINTKTIVFCNNSAEEQR
FQEIIHTLPAKENGRLELRIGHLHKGFQFSDIGIAILAHHEIFHRYRQRREPKKPIQTRA
IDSFLELKRGDYIVHMTHGIGRFRGMETLEEEGHKREYLIVEFDEGTKIYVPATKIELVQ
KYIGSSDHKPRLDKIGSKYWEVRKRRTENAVKDVASDLLHIQALRNAKEGIVYPKDTEWQ
KEFEAEFIYEETPDQLQIIEDIKRDMESERPMDRLICGDVGYGKTEIAMRAAFKAVMYGK
QVAVLVPTTILAQQHYSTFSERMADYPVKIEVLSRFKTQKEQKDVLEKTSAGLTDILIGT
HRLLQKDVHFKDLGLVIIDEEQRFGVEHKERLKRLRQMVDVLTLTATPIPRTLHMSLMGI
KDISSLNTPPSGRQAIHTQIIRFDPARIRQAIMFELNRDGQVYFVHNRVYNIERIAQTLS
RIVPEARITTLHGQMDERFMEQRMHEFVEGKADILVCTTIIESGLDIPNVNTILINCADT
FGLADLHQLRGRVGRYKHRAYAYMILPVDRPITPEAEKRVKAVEEFAELGAGFRIAMRDL
EIRGSGNILGTEQHGHIAAVGYEMYCRLLELAVKKARHETVHEPIEVSIDLKLESFIPKN
YIQEDTLKMDIYRRLNRSVTLEEVQAIAHEIADRFGTIPHPVKNLLSESELRIIAQGARI
RSMVRVDNILIMQVADLKRAETNLYNLKKYIRIINEDTLHMRLPKKEIRPEDLLDFLKKS
IKI
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattattgcatcaaaacaagcaatacaaggagattgtttctcatgtattgagaggg
gatgattgttctgtcaatggactatggggatcatctgcaaacttttttattacagcaatt
gccaatgagagactgaagagaattgagaaacagccaaagatccttcttgttgtacccact
ctagaagaggctcaggatgatcttgaagacctgaatacctttctccaaaaccatgtcagt
ttatttcctgccaatgaaagtatctttcctgaagatttcagtgataatgatattttggcg
caaaggattcatatcctcaagcagatactccacagcgatagcaattcccgaagcaaactg
gatattattgtatcgcctattcaggcactgttacaacccgtgccgtctcctcaatccctt
tctgaaaacatcctctgcattcggaagaaccaggaacactcccgtgataaactcattcta
tggttgcaggatcaccattatcaatcggttagccagatagaaaatgccggagaatatgcc
ctgcggggcggtattgttgatatttttccttatgcctctgatgttccttaccgtattgag
tattttggcgatgagatagaatccatccgtggatttaatctcgaatcccaattatccgaa
caagatttagatacatgtcaaatactttctctcgataggattcatcgtgtggcacagaca
cacgctgccggattggaatcacaaaaaacgtcactcctcgactatcttaagaaagatacc
tggattattctcaaagaacctgcaagcctggaagatcggacgagaaaaatattgatcgat
gtagataacagaaggacattgcttaccgaggatgaaatttttggacaattaagtaccttt
acgaagatacacatatcgaagctaccctttgtacttgacaacagtaattatacatttcac
gttaaatcggtgaatgattttcctcaaaatattcaggcaattataccggaactgagcaag
ataactgatatcaacacgaaaacgatcgttttctgtaataatagtgctgaagagcaacgc
tttcaggagattattcatactctacccgcaaaagaaaatggacgattagagctccgtatt
ggtcatctccacaaaggatttcaattctctgatatagggattgctatccttgcacaccac
gaaatctttcatcgttataggcagcgccgcgagccgaaaaagcctatccagaccagggca
attgactcttttctggaattgaaaagaggcgattatatagttcacatgactcatggtatt
ggacgctttcgggggatggaaacgttagaagaggaagggcataagagggaatatctcata
gtggagtttgacgagggcacaaagatatatgtgcctgctactaaaattgagctggtacaa
aagtatatcggcagttcagaccacaaacccaggcttgataagattggttcaaaatattgg
gaagttcgaaaaagacgaacggaaaatgctgtcaaagatgttgcaagcgatttgcttcat
atccaggcattgcgcaacgcaaaggaaggcattgtttatccgaaagatacagagtggcag
aaagagtttgaagcggaatttatctacgaggaaacccccgatcaactccaaattatagag
gatataaagcgtgatatggaatcggaaagacctatggaccggcttatttgtggagacgtc
ggttatgggaaaacagagatcgccatgagggcggctttcaaggctgtgatgtatgggaag
caagtggcagtgctggtacccacgactatcctggcacaacagcactatagtaccttttca
gaacgtatggccgattatccagtcaaaattgaagtgttaagccggtttaaaacacaaaaa
gagcaaaaggatgtcctggagaagacctccgcaggtcttaccgatatccttattggtact
caccggctgttacaaaaagatgtccattttaaagatcttggcttggtcattattgatgaa
gagcagcggtttggtgttgaacataaagagcgtcttaagaggttacggcaaatggtagat
gtgcttactttgacagctacgccaataccgagaacgctccatatgtcgttaatgggaatc
aaggatatttcttcactcaatacacctccatcgggcagacaagctatccatacacagatt
atccgatttgatcccgctcggattcggcaagccatcatgtttgaactcaaccgagatggt
caggtgtattttgttcataaccgtgtttataatatcgagaggatcgctcaaaccttatcc
aggattgtgccggaggcgcgcattacaacccttcatgggcagatggatgaaaggtttatg
gaacaaagaatgcatgaatttgtagaaggtaaggcagatatcctggtatgtacgacaatt
attgaatcagggctggatattcccaatgttaacacgatattaatcaattgcgctgatacg
tttggtctagcagatttacatcagttacgggggagggtggggcggtacaaacaccgcgcc
tatgcctatatgatattacctgttgatcgtcctattactccggaagcagaaaaacgtgta
aaagctgttgaggaatttgcagagctgggcgcaggctttcgaatcgctatgcgcgatttg
gaaatcagaggctccggaaacatccttggaacggaacagcatggccatattgcggctgta
ggttatgagatgtattgccggttattagaattagcggtaaaaaaggcaagacacgaaact
gtacatgagccgatcgaggtttccatcgaccttaaactggaatcttttattcctaaaaac
tatattcaggaagatactctgaaaatggatatctatcggagattaaaccgttccgttact
ctcgaggaagtacaagctattgctcatgaaatagcagaccgttttggtactatccctcat
ccggtaaaaaatctcctttccgagagtgaactgaggattattgctcagggggcgagaatt
cgctctatggtacgggtagataatattttaattatgcaagtagccgatttaaaaagggca
gaaacaaacttgtataatctaaaaaaatatatacggattattaatgaagataccctgcat
atgagattacccaagaaagaaatacggccggaggatttactggattttttaaaaaaatca
attaaaatctaa
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