Jeongeupia sp. USM3: BJP62_00390
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Entry
BJP62_00390 CDS
T04552
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
jeu
Jeongeupia sp. USM3
Pathway
jeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP62_00390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jeu03019
]
BJP62_00390
03016 Transfer RNA biogenesis [BR:
jeu03016
]
BJP62_00390
Enzymes [BR:
jeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BJP62_00390
Messenger RNA biogenesis [BR:
jeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJP62_00390
Transfer RNA biogenesis [BR:
jeu03016
]
Prokaryotic type
tRNA degradation factors
BJP62_00390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AOX99041
UniProt:
A0A1D9B9Z8
LinkDB
All DBs
Position
79688..82654
Genome browser
AA seq
988 aa
AA seq
DB search
MSRNKAEKIEKTASSAAKPKRTRKPQGLRAQDPYLARERERYESPLPSREFILQILADAG
APLDADELARMLGILEAEQIAFQRRIAAMAREAELMINRKGALVLPQKVALIAGRVQGHP
DGFGFLVPDDDSGDLYLGPREMAKVLHNDRVLGQQIGVDRRGRREGKIVEVLERVNTSLV
GRLRTERGVNIVTAEDKRISQEILIPPGDVNGAEPGQVVVVEIVQQPERHVQPLGRVSEI
LGRYDDPGMEIEIALRKHNLPHVFSNAAEAQADATPQKVRKKDWQPVRGVAREDIRDLPL
VTIDGETARDFDDAVFAEKKGKGWRLVVAIADVSHYVTPDDALDLTSIERGNSVYFPRRV
IPMLPEALSNGICSLNPDVERLTMVCDMQVSAKGLIKKYRFYPAVMHSKARLTYNKVWEM
LSQPDGALAQDNKKLLPHLQTLYALFQAFSSARKQRGAIDFETTETEVRFDDKGKIREIV
PVVRNDAHKLIEECMLAANVCAADFLIESEHPTLFRVHEGPTPEKLEYLREYLKTCGLFL
EGGDEPGASDYAAVLEKIKDRPDAGLLQTLLLRSLRQAVYSPDNKGHFGLGYDAYAHFTS
PIRRYPDLLVHRAIKAVLAGKKYKPARKWEDLGLQCSMTERRADEASRDVLNFLKCYFMR
DKVGEEFEGTISAVTGFGLFVMLDGLYVEGLLHVSELGKDYFNFDERRHEMKGERSGKLY
RLTDRIKVKVARVNLETSKVDFVLAEELATPLAEPQSEVRRSAPRKRRGKRPAGGAAPTA
QPAVTQPVASQPAVPAQPSRPTQRSRAKVRSVTPTPTPTPTPTPTPTPTPTPAPAPAPAA
SSRRKAAPAAKPAVTAADAPKVAAPAPVRSRSGAATADAAAQPAGVPKPAAPRRARGGAT
RAVAGSGAEQAKAPAAKPAAPRRPVATTPATTPASADVATTSRRRKPAVAALLAPPRTAA
PVAESAAAPVAAEPAPAEAKPRTRRRKS
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaataaagctgaaaaaatcgaaaaaaccgcaagcagtgccgcgaagcccaag
cggacccgcaaaccgcaaggccttcgcgcccaggacccctacctcgcgcgcgagcgcgag
cgctacgaatcgccgctgcccagccgcgagttcatcctccagattctcgccgacgccggt
gcgccgctcgacgccgacgagctggcgcgcatgctcggcatcctcgaagccgagcagatc
gccttccagcgccggatcgccgcgatggcgcgcgaagccgagctgatgatcaaccgcaag
ggcgccctggtgctgccgcagaaggtggcgctgatcgccggccgcgtccaggggcatccg
gacggcttcggcttcctggttcccgacgacgacagcggcgatctgtacctcggcccgcgc
gaaatggccaaggtgctgcacaacgaccgtgtgctcggccagcagatcggcgtcgaccgc
cgcggccggcgcgaaggcaagatcgtcgaggtgctcgagcgcgtcaacacctcgctggtc
gggcggttgcgcaccgagcgcggcgtcaacatcgtcactgccgaagacaagcgcatcagc
caggaaatcctcatcccgccgggcgatgtcaatggcgccgagccgggccaggtcgtggtc
gtcgagatcgtccagcagcccgagcgccacgtacagccgctgggccgcgtcagcgaaatc
ctcggccgctacgacgacccgggcatggagatcgagatcgcgctgcgcaagcacaacctg
ccgcacgtcttctccaatgccgccgaggcgcaggccgatgccacgccgcagaaggtcagg
aagaaggactggcaaccggtcaggggcgtcgcgcgcgaggacatccgcgacctgccgctg
gtgacgatcgacggcgaaaccgcgcgggacttcgacgacgccgtctttgccgagaagaaa
ggcaagggctggcgccttgtcgtcgcgattgccgacgtcagccattacgtgacgccggac
gatgcgctggacctgacgtcgatcgaacgcggcaactcggtgtacttcccgcgccgggtg
attccgatgctgcccgaagcgctgtcgaacggcatctgctcgctcaaccccgacgtcgag
cggctgacgatggtctgcgacatgcaggtcagcgccaagggcctgatcaagaagtaccgc
ttctacccggcggtgatgcactcgaaggcgcggctgacctacaacaaggtctgggaaatg
ctgtcgcagcccgacggtgcgctggcgcaggacaacaagaaactgctgccgcacctgcag
acgctgtacgcgctgttccaggcgttctcgagcgcgcgcaaacagcgcggcgcgatcgac
ttcgagacgaccgaaaccgaggtccgtttcgacgacaagggcaagatccgcgagatcgtc
ccggtcgttcgcaacgatgcgcacaagctgatcgaggagtgcatgctcgccgccaacgtc
tgcgcggccgacttcctgatcgaatcggagcacccgacgctgttccgcgtccacgaaggg
ccgacaccggaaaagctcgagtatctgcgcgagtacctgaagacttgcggactcttcctc
gaagggggtgacgagcccggcgcgtccgactatgccgcggtgctcgagaagatcaaggac
cgtcccgacgccggcctgttgcagacgctgctgctgcgcagcctgcgccaggcggtctac
agtccggacaacaaggggcacttcggccttggctacgacgcctatgcccacttcacgtcg
ccgatccgccgctatccggacctgctcgtgcaccgggcgatcaaggccgtgctcgccggc
aagaaatacaagccggcgaggaagtgggaagacctcggcctgcagtgctcgatgaccgag
cgccgcgctgacgaagccagccgcgacgtgctcaatttcctcaagtgctacttcatgcgc
gacaaggtcggcgaggagttcgaggggacgatttcggcggtgaccggtttcggcctgttc
gtgatgctcgacggcctgtatgtcgagggcctgctgcacgtgtccgaactcggcaaggac
tacttcaacttcgacgaacgccgtcatgaaatgaagggcgaacgcagcggcaagctgtac
cggctgaccgaccggatcaaggtcaaggtcgcgcgggtcaatctcgaaaccagcaaagtc
gacttcgtgctggccgaagagcttgccacgccgctcgcagagccgcagtccgaagtccgc
cgcagcgcgccgcgcaagcgccgcggcaaacgcccggccggcggtgcagcgcccacggcc
cagccggccgtaacccaaccggtcgcatcccagcctgctgtccctgcccagccatcgagg
ccgacgcagcgcagccgtgccaaggtacgctcggtgacgccaacgccaacgccaacgcca
acgccaacgccaacgccaacgccaacgccaacgccggcaccggcaccggcaccggcggcg
tcgagtcgccgcaaggctgcgccggcggccaagccggcggtgacggctgcggatgcgccc
aaggtggcggcacccgctccggtgcgttcgcgcagcggtgcggcgacggccgatgcagcc
gcccaacctgccggggtgccgaaaccggccgcgccgcgccgcgcacgcggtggcgcgacc
cgggctgtcgcaggctccggcgccgagcaggccaaggcaccggctgcaaaaccggctgcg
ccgcggcgtccggttgcgacgacgcccgcgacaacaccggcttcggcggacgtcgccacg
acgagccgccgccgcaaaccggccgtcgcggccctgctggcgccgccccggaccgccgca
ccggttgctgagtccgccgcagcaccagttgccgccgagccggcaccggccgaggccaag
ccgcgcacgcgccgcagaaaatcctga
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