Jeongeupia sp. USM3: BJP62_14910
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Entry
BJP62_14910 CDS
T04552
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jeu
Jeongeupia sp. USM3
Pathway
jeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP62_14910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jeu03019
]
BJP62_14910
03400 DNA repair and recombination proteins [BR:
jeu03400
]
BJP62_14910
Enzymes [BR:
jeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJP62_14910
Messenger RNA biogenesis [BR:
jeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJP62_14910
DNA repair and recombination proteins [BR:
jeu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJP62_14910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
zf-CXXC
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOY01628
LinkDB
All DBs
Position
complement(3142026..3143810)
Genome browser
AA seq
594 aa
AA seq
DB search
MSATPLSVLEHVFGYHAFRGQQGEIVEHVAAGGDALVLMPTGGGKSLCYQVPALLRDGCA
VVVSPLIALMQDQVDTLKELGVAAAFLNSTVDLDTAREIERDFLSGKLKLLYVAPERLMT
PRFMGLIKSGSVSLFAIDEAHCVSQWGHDFRPEYLQLSVLADDFPGVPRIALTATADHAT
REEMAERLRLKDARQFVSSFDRPNLRYTIVEKQNGRDQLLSFIRREHEGESGIVYCLSRK
KVEDTAAWLREKQIRAYPYHAGLDASTRANHQKIFLRDEGVVMVATIAFGMGIDKPDVRF
VAHLDLPKSIENYYQETGRAGRDGLPANAWLTYGLNDLMLLTQMIEGSNAPDEQKMVERR
KLDAMLGFVEATDCRRQTLLGYFGEATQACGNCDNCLNPPKLVDVSEAARKALSCVFRTG
NRFGVGHLVDVLLGKDNAKVREHCHQVVSTYGIGKDTPEATWRAIFRQLVARGALQLSPE
SRGGLALGDAARPILKGEADVFLRARSEKFTAKSRNAGFDSPADDALWQALRRKRKALAD
EQNVPAYVIFGDATLKEMVRLRPADHYELGRVTGVGDRKLDKYGDAFLAVIAAH
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaccccgctctccgtcctcgaacacgttttcggttatcacgccttccgcggc
cagcagggcgagatcgtcgagcacgtcgccgccggtggcgatgcgctggtgctgatgccg
accggtggcggcaagtcgctgtgctatcaggtgccggcgctcttgcgcgacggttgcgcg
gtggtcgtctcgccgctgatcgcgctgatgcaggatcaggtcgatacgctgaaggagctc
ggcgtcgccgcggctttcctcaattcgaccgtcgacctcgacaccgcacgcgaaatcgag
cgcgatttcctctccggcaagctcaagctgctctacgtcgcgcccgagcggctgatgacg
ccgcgcttcatggggctgatcaagagcggctcggtgtcgctgttcgcgattgacgaggcg
cactgcgtctcgcaatggggccatgatttccgccccgaatacctgcagttgtcggtcctc
gccgacgacttccccggcgtgccgcgcatcgcgctgaccgcgacggccgaccacgcgacg
cgcgaggaaatggccgaacggctgcggctcaaggacgcgcgccagttcgtctcgtcgttc
gaccgccccaacctgcgctacaccatcgtcgaaaagcagaacggccgcgaccagctcttg
agcttcatccgccgcgagcacgaaggcgaatcgggcatcgtctattgtctgtcgcgcaag
aaggtcgaagacaccgcggcctggctgcgcgagaagcagatccgtgcctacccctaccac
gccgggctcgatgccagcacccgcgccaatcaccagaagatcttcctgcgcgacgaaggc
gtggtgatggtcgcgaccatcgccttcggcatgggcatcgacaagcccgacgtgcgcttc
gtcgcccacctcgacctgcccaagagcatcgagaactactatcaggaaaccggccgcgcc
ggccgcgacggcctgccggcgaacgcctggctgacctacggcctgaacgacctgatgctg
ctgacgcagatgatcgagggctcgaacgcacccgacgaacagaagatggtcgagcgccgc
aagctcgacgcgatgctcggcttcgtcgaggccaccgactgccgccgccagaccttgctc
ggctacttcggcgaggcgacgcaagcgtgcggcaactgcgacaactgcctgaatccgccc
aagctcgtcgacgtgtccgaagcggcacgcaaggcgctgtcttgcgtgttccgcaccggc
aaccgcttcggcgtcggccatctggtcgatgtgctgctcggcaaggacaacgccaaggtg
cgcgagcactgccaccaggtggtatcgacctatggcatcggcaaggacacgcccgaagcc
acctggcgggcgatcttccgccagttggtcgcgcgcggcgcactgcagctctcgcccgag
agccggggcgggctggcgctcggcgacgcggcgcggccgatcctcaagggcgaggccgac
gtcttcctgcgcgcgcgcagcgagaagttcaccgccaagagccgcaacgccggcttcgac
agtccggccgacgatgctttgtggcaggcactgcggcgcaagcgcaaggcgctggccgac
gagcagaacgtgccggcctacgtgatcttcggcgacgccacgctgaaggaaatggtccgt
ctgcgcccggccgaccattacgaactcggccgcgtcaccggcgttggcgaccgcaagctc
gacaagtacggcgacgcgttcctcgcggtcatcgccgcgcactaa
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