Jeongeupia sp. USM3: BJP62_14940
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Entry
BJP62_14940 CDS
T04552
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jeu
Jeongeupia sp. USM3
Pathway
jeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP62_14940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jeu03019
]
BJP62_14940
Enzymes [BR:
jeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJP62_14940
Messenger RNA biogenesis [BR:
jeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJP62_14940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOY01634
LinkDB
All DBs
Position
3148780..3150144
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AA seq
454 aa
AA seq
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MSFSTLGLAREVQQAVEAMGYENPTPIQSKAIPLVLAGRDVLGAAQTGTGKTAAFTLPIL
TLLAPHASNSVSPAKHPVRALILTPTRELADQVGENVKTYSQFMPLRSHIVFGGVDIKAQ
IPPLRAGVEVLVATPGRLLDHVQQKSVNLSQVEILVLDEADRMLDMGFILDIKKIISMLP
KRKQTLLFSATFSPEIKKLSAEFLNNPELVEVARQNATNENVEQLLHPCETHRKPALLAH
LIRTHQMGQVIVFNRTKIGADQVARELKRGGFNCEAIHGDREQRARLETLQRFKDGTLQI
LVATDVAARGLDISELPYVVNFELPNNPEDYVHRIGRTGRAGAKGVAISLVDPGEDKAYA
LIQKLIKKELPLTPVPGYSPGTTPVQPERPNRGERRHPEERRDTVEARAAAPRQSRPRSN
DIDVPQPTRPLPALPKRTQQIAALFLPPKHPVGK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagtttctcgaccctgggcttggcccgggaagtacagcaggccgtcgaggccatgggt
tacgaaaacccgaccccgattcagtcgaaggcaattccgctggtgctcgccggccgcgac
gtgctcggcgccgcgcagaccggcaccggcaagaccgccgcgttcacgctgccgatcctg
accctgctggcgccgcatgccagcaacagcgtgtcgccggccaagcatccggtgcgcgcg
ctgatcctgacgccgacgcgcgagctggccgaccaggtcggcgagaacgtcaagacgtac
tcgcagttcatgccgctgcgcagccacatcgtcttcggcggcgtcgacatcaaggcgcag
attccgccgctgcgcgccggcgtcgaagtgctggtcgccacgccgggccggctgctcgat
cacgtgcagcagaagtcggtgaacctgtcgcaggtcgagatcctcgtgctcgacgaggcc
gaccgcatgctcgacatgggcttcatcctcgacatcaagaagatcatctcgatgttgccc
aagcgcaagcagaccctgctgttctcggcgacgttctcgcccgagatcaagaagctctcg
gccgagttcctgaacaacccggaactcgtcgaagtggcgcggcagaacgcgaccaacgag
aacgtcgagcagctgttgcacccgtgcgaaacgcaccgcaagccggcactgctggcgcac
ctgatccgcacgcaccagatgggccaggtcatcgtgttcaaccgcaccaagatcggcgcc
gaccaggttgcgcgcgaactcaagcgcggcggtttcaactgcgaggcgatccacggcgac
cgcgagcagcgcgcccggctcgaaacgctgcagcgcttcaaggacggcacgctgcagatc
ctcgttgcgaccgacgttgccgcgcgcggcctcgacatctccgagctgccctatgtggtc
aacttcgagctgccgaacaaccccgaggactacgtccaccggatcggccggaccggccgc
gccggcgccaagggcgtggcgatctcgctggtcgacccgggcgaggacaaggcctacgcg
ctgatccagaagctgatcaagaaggaactgccgctgacgccggtgccgggctattcgccg
ggcacgacgccggtgcagcccgagcgcccgaaccgcggcgagcgccgccatccggaagag
cgccgcgacaccgtcgaggcccgcgctgctgcaccgcgccagtcgcgcccgcggtcgaac
gacatcgacgtgccgcagccgacgcggccgctgccggcgttgcccaagcgtactcaacag
atcgccgcgcttttcctgccgccgaagcatccggtcggcaagtga
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