Jiella pelagia: OH818_26155
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Entry
OH818_26155 CDS
T08667
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
jie
Jiella pelagia
Pathway
jie02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jie00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OH818_26155 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jie03021
]
OH818_26155 (rpoD)
Transcription machinery [BR:
jie03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OH818_26155 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WAP68701
UniProt:
A0ABY7BXY4
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All DBs
Position
5213292..5215295
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AA seq
667 aa
AA seq
DB search
MATKAKENEAAVEERNDNTPDGPLLDLSDDAVKKMIKAAKKRGFVTMDKLNSMLSDDVTS
EQIEDMMAMLNDMGINVVEDDEEGGEEEAPAESESTEVAETGATQVAAAPKREAGDRTDD
PVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEGNI
MLREIVDLEATYAGPEAKTPPAQPGGEGAAAPAVNGAGGERLNGNGEEQPAGGEDDDDED
DLENNLSLAAMEAEIKPQVMEIFDQIADGYRRLRKLQDQQVENRLAAQGTLSPSQERSYK
KLKEDLVGAVKSLSLNQNRIDALVAQLYDINKRLVGNEGRLLRLAESHGVKREEFLREYQ
GSELDPNWTRHVANLAGKGWLKFVQNDKDGIKGLRQEIQNLATETGLEITEFRRIVQMVK
KGEAEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEK
LAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAILPIDAAIQGNLRETTTR
VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRK
LRSFLDS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaggccaaggaaaacgaagcagccgtcgaggagcgtaacgacaacacgcct
gacggacctctgctcgacctttcggacgacgccgtcaagaagatgatcaaggccgcgaaa
aaacgcggcttcgtgaccatggacaagttgaactcgatgctgtccgacgacgtgacgtcg
gagcagatcgaggacatgatggccatgctcaacgacatgggcatcaacgtcgtcgaggac
gacgaggagggcggcgaggaagaagcgccggccgaatcggaatccaccgaggtcgccgaa
accggcgccacccaagtcgcggcagcgcccaagcgcgaggcgggcgaccgcacggacgat
cccgtgcggatgtatctccgcgaaatgggctcggtcgaactcctgtcgcgcgagggcgag
atcgccatcgccaagcgcatcgaggccggccgagagacgatgatcgccggactctgcgag
agcccactgaccttccaggcgattatcatctggcgtgacgagctgaacgaaggcaacatc
atgttgcgcgagatcgtcgatctcgaagcaacctatgccgggccagaggccaaaaccccg
ccggcccagcccggaggcgagggtgccgctgccccggccgtcaacggtgcaggcggcgag
cgcctgaacggcaacggcgaggagcagccggccggcggcgaggacgacgacgacgaggac
gacctcgagaacaacctctcgctcgcggcgatggaagccgagatcaagccgcaggtcatg
gagatcttcgaccagatcgccgatggctaccggcgtctgcgcaagctccaggaccagcag
gtcgagaaccgtctggccgcccagggcaccctgtcgccgagccaggagcgctcctacaag
aagctgaaggaagacctcgtcggggcggtgaagagcctgtcgctcaaccagaaccgcatc
gacgcgctggtcgcccagctctacgacatcaacaagcgcctcgtcggcaatgaaggccgg
ctcctgcgcctcgccgaatcccacggcgtcaagcgcgaagaattcctgcgcgagtatcag
ggctcggaactcgatccgaactggacccgccacgtcgccaacctcgccggcaagggctgg
ctgaaattcgtccagaacgacaaggacggcatcaaggggctccgccaggagatccagaat
cttgccaccgagaccggcctcgagatcaccgagttccggcgcatcgtccagatggtgaag
aagggtgaggcggaagcccgccaggccaagaaggagatggtcgaggcgaacctcaggctc
gtcatatcgatcgccaagaaatacaccaatcgcggcctgcagttcctggatctgatccag
gagggcaacatcggcctgatgaaggcggtggacaagttcgaataccgccggggttacaag
ttctcgacctatgcgacctggtggatccggcaggcgatcacccgctcgatcgccgatcag
gcccgcaccatccgcatcccggtgcacatgatcgagacgatcaacaagatcgtccgcacc
tcgcgccagatgctgcacgagatcggccgcgagccgacgccggaggagctggcggagaag
ctggcgatgccgctggaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcc
ctcgaaacgccggtcggtgacgaggaggattcgcatctcggcgacttcatcgaggacaag
aacgccatcctgccgatcgacgcggcgattcagggcaacctgcgcgagacgacgacccga
gtcctcgcctcactcacgccccgtgaggagcgcgttctgcgcatgcgcttcggaatcggc
atgaacaccgaccatacgctggaagaggtcggccagcagttctcggtcacccgcgagcgc
atccgccagatcgaggcgaaggcgctgaggaagctgaagcacccgtcgcggtcaaggaag
cttcggagcttcctcgacagctga
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integrated database retrieval system
