Janibacter limosus: EXU32_12160
Help
Entry
EXU32_12160 CDS
T05853
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jli
Janibacter limosus
Pathway
jli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EXU32_12160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jli03021
]
EXU32_12160
03400 DNA repair and recombination proteins [BR:
jli03400
]
EXU32_12160
Enzymes [BR:
jli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EXU32_12160
Transcription machinery [BR:
jli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EXU32_12160
DNA repair and recombination proteins [BR:
jli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EXU32_12160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QBF46939
UniProt:
A0A4P6MVB0
LinkDB
All DBs
Position
complement(2544683..2548561)
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVNFFDELRIGLASAEDIRNWSHGEVKKPETINYRTLKPEKEGLFCERIFGPTRDWEC
SCGKYKRVRFKGIICERCGVEVTRAGVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDVDQRHTDLPSLEAQIDAEKKELENRRDADVETRAQKLEKD
IAELEAEGAKSDAKRKVRDSAEREMNQIRKRADLQVERLAQVWDRFKNLKVQDLEGDEVL
YREMRDRFGLYFEGGMGAAAIQKRLETFDLQAESEKLREIIATGKGQKKTRALKRLKVVT
AFLTTDNKPAGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDNLFDNGRRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLDHAQNIKSAKRMVERHR
SVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMIIGLFHLTSEVPLETERPR
SFSSTSEARMAFDAGEIKIGTPIRVRLEDIVPPAGQLPEGAEPDEQGLIKQWTAETTLGR
AVFNGTLPEDYPFVNEPVDRKRLSTIVNDLAERYTKVQVAASLDALKEAGFHWASRSGTT
VALSDVVTPPRKPEILAVYEEKATKVQKQYERGLITDDERRQEQIEIWTQATNEVSTEMQ
ENFPKDNPIYRMVSSGARGNWFQLRQIAGMRGLMANPKGEIIPRPIRTNFREGLSVVEFF
ISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTERGLTMPIAQHDELTGT
RRIHDEVEFTVYGRCVAAAVEHEGAVLAEAGSDLGDVVIDRLYQAGVDEVKIRSVLTCES
KVGTCAKCYGRSLATGQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLP
RVVELFEARTPKGVAPIAEADGRVTIEETDKGRRLLLVADRDGEEHAYPVSKRSRLLIED
GERVTVGTQLTQGAIDPKQVLRILGPRHAQKHLVDEVQKVYRQQGVSIHDKHIEIIVRQM
LRRITILEAGDTGLLPGMLAERARFEIENRRVVSEGGRPASGRPELMGITKASLATDSWL
SAASFQETTRVLTEAAMEGRSDPLLGLKENVILGKLIPAGTGLPRYRNVDVEPTEEAKAA
MYSLPNYDEYAYPVFGPGSGEAIRLDDLDLDV
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgacgagttgcgcatcggcctggcctccgcggaagacatc
cgcaactggagccacggcgaggtcaaaaagcctgaaaccatcaactaccgcaccctgaag
cccgagaaggagggcctcttctgcgagcggatcttcggccccacccgggactgggagtgc
tcctgcggcaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgcgccggcgttcgccgtgagcgcatgggtcacatcgagctcgctgcgccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgccttggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcaccagcgtcgac
gtggaccagcgccacaccgacctgccctccctcgaggcgcagatcgacgcggagaagaag
gagctcgagaaccgccgcgacgcggacgtcgagacccgcgcgcagaagctcgagaaggac
atcgccgagctcgaggccgagggcgccaagtccgacgccaagcgcaaggtgcgtgactcc
gccgagcgcgagatgaaccagatccgcaagcgtgccgaccttcaggtcgagcgtctcgcg
caggtctgggaccgcttcaagaacctcaaggtccaggacctcgagggcgacgaggtcctc
taccgcgagatgcgtgaccgcttcggtctgtacttcgagggcggcatgggtgccgcggcg
atccagaagcgtctggagaccttcgacctccaggccgagtccgagaagctgcgcgagatc
atcgcgaccggcaaggggcagaagaagacccgcgcgctcaagcgcctcaaggtcgtcacc
gccttcctcaccacggacaacaagcccgcgggcatggtcctggacgccgtcccggtcatc
ccgccggacctgcgcccgatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgtctcaagcgactgcttgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacaac
ctcttcgacaacggtcgtcgcggtcgtgcggtcaccggaccgggcaaccgtccgctgaag
tcgctctccgacatgctcaagggcaagcaggggcgcttccgccagaacctcctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctcgagctcttcaagcccttcgtcatgaagcggctc
gtcgacctcgaccacgcccagaacatcaagtcggccaagcgcatggtcgagcgtcaccgg
tccgtggtgtgggacgtcctcgaagaggtcatcaccgagcacccggtcctgctcaaccgc
gcgcccacgctgcaccgtctgggcatccaggccttcgagccgcagctcatcgagggcaag
gccatccagatccacccgctcgtctgcaccgccttcaacgcggacttcgacggtgaccag
atggccgtgcacctcccgctcagcgcggaggcccaggccgaggcccggatcctgatgctc
tcgagcaacaacatcctcaagccggctgacggtcgccccgtcacgatgccgacccaggac
atgatcatcggtctcttccacctcacctccgaggtgccgctggagaccgagcgtccccgc
tccttctcgtcgacgtccgaggcccgcatggccttcgacgccggtgagatcaagatcggc
acgccgatccgggtccgcctcgaggacatcgtccccccggccggccagctgcccgagggt
gccgagcccgacgagcagggcctgatcaagcagtggacggccgagacgaccctgggtcgt
gcggtgttcaacggcacgctgccggaggactaccccttcgtcaacgagccggtcgaccgc
aagcgtctgtcgacgatcgtcaacgacctcgccgagcgctacaccaaggtgcaggtcgca
gcctccctggacgccctcaaggaggccggtttccactgggcctcccgctcgggcaccacg
gtcgcgctgtccgacgtcgtgaccccgccgcgcaagccggagatcctcgcggtctacgag
gagaaggcgaccaaggtccagaagcagtacgagcgcggtctgatcaccgacgacgagcgt
cgtcaggagcagatcgagatctggacccaggcgaccaacgaggtctccaccgagatgcag
gagaacttcccgaaggacaacccgatctatcggatggtcagctcgggtgctcgtggtaac
tggttccagctgcgccagatcgccggtatgcgtggcctcatggccaacccgaagggcgag
atcatccctcgcccgatccgcacgaacttccgtgagggtctgtccgtcgtcgagttcttc
atctcgacgcacggtgctcgcaagggtctggccgacaccgcccttcgtaccgccgactcc
ggctacctgacgcgtcgtctcgtcgacgtctcccaggacgtcatcgtccgcgaggacgac
tgcgggaccgagcgtggtctgaccatgccgatcgcgcagcacgacgagctgaccggcacc
cgtcgtatccacgacgaggtcgagttcaccgtctacggccggtgcgtcgccgctgcggtc
gagcacgagggtgcagtcctggccgaggccgggtccgacctcggtgacgtcgtcatcgac
cggctctaccaggccggcgtcgacgaggtgaagatccgctcggtgctcacctgcgagtcc
aaggtcggcacctgcgccaagtgctacgggcgcagcctggccaccggtcagctcgtcgac
atcggcgaggccgtcggcatcgtcgcggcccagtcgatcggtgagcccggtacccagctg
acgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacgcagggtctgccg
cgtgtcgtcgagctcttcgaggcgcgtacccccaagggtgtcgccccgatcgccgaggcc
gacggccgcgtcacgatcgaggagaccgacaagggtcgtcgtctgctgctcgtcgccgac
cgcgacggcgaggagcacgcctaccccgtgagcaagcgttcgcgcctgctcatcgaggac
ggcgagcgcgtcaccgtcggcacccagctgacccagggcgccatcgaccccaagcaggtc
ctgcgcatcctcggcccgcgtcacgcccagaagcacctcgtcgacgaggtgcagaaggtc
taccgccagcagggtgtgtcgatccacgacaagcacatcgagatcatcgtgcggcagatg
ctgcgccggatcacgatcctcgaggccggcgacaccggtctgctgccgggcatgctcgcc
gagcgcgcccgcttcgagatcgagaaccgtcgcgtcgtgtccgagggcggtcgcccggcc
tcgggtcgcccggagctcatggggatcaccaaggcctcgctggccacggactcctggctc
tccgccgcctccttccaggagacgacccgcgtcctcaccgaggccgcgatggagggtcgc
tcggacccgctgctgggtctgaaggagaacgtcatcctcggcaagctgatccccgccggt
acgggcctgccccgctaccgcaacgtggacgtcgagcccaccgaggaggccaaggccgcg
atgtactcgctgcccaactacgacgagtacgcgtacccggtcttcggtccggggtccggc
gaggcgatccgtctcgacgacctcgacctggacgtctga
DBGET
integrated database retrieval system
