Janthinobacterium lividum: G3257_09320
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Entry
G3257_09320 CDS
T06723
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jlv
Janthinobacterium lividum
Pathway
jlv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jlv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3257_09320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jlv03019
]
G3257_09320
03400 DNA repair and recombination proteins [BR:
jlv03400
]
G3257_09320
Enzymes [BR:
jlv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3257_09320
Messenger RNA biogenesis [BR:
jlv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3257_09320
DNA repair and recombination proteins [BR:
jlv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G3257_09320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_16
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QKY02427
LinkDB
All DBs
Position
2078884..2081382
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AA seq
832 aa
AA seq
DB search
MMNVYEGEAAYTALRVALGDPSTAASFKCDEVPFERLRRAIADERLSPLDRAIRLRHALR
HADLTLSAGGVRRALPHPTGVLWPTAQQCATCGLVLRAGNLVEAEPWRPDWLEHGAAAVD
TQAMQQQVRPWIQRLPEADRWIKARFGYQHYRGPGQALAVRSALHMLPGQALLAILPTGE
GKSLVFQALAAAHPGQVVAVVVPTVALAQDHDNSVSKYGEQFGTHTHAYVGGQDQQNAEI
IDRIGTGEQGLVFAAPEAFVGRLQPALLRAAKAGKLAAVVIDEAHLIDAWGTDFRNEFQL
LAALVAELQTQAPVRRQSRLLCLSATVTQLAYDTLQRLFSPHAPLALVAGARLRPEPDTW
VARMAPDEATRKARVLEAVMHLPRPAILYVTKVEDVQDWYQFLFDHGLRRMRTVHGKSSP
SDRSATVKAWSTGELDLVIGTSAFGLGIDYPHVRTVIHACIPESLDRYYQEVGRSGRDNH
ASIVLLVPAPVDGGVAHTVSAQKIISVEKGLARWSSMFSYCESDTSADAERRFSIDTSVP
PPYDMDMMGERNEDWNGRVLSLMARAGLIAFAGLRFNPAKMRTNVVVDILDDGHHDPVIW
QTHVEPVRQTLLRTSRERLRGMLALTREVQCPSQRLINLYALNNGVEVLPVVPACGGCAA
CRAAGEPGWFADWPNPPAAPWPAGGLSPRLLRQIVHGRGLIERDTESFDKSSQRRFIRDV
MNGLWDDGVRKCLVIGSTPTAVDEALTERPWCTAQANDAKLLSSNGLPPGPVVVWVGAGM
SIPEHNFSPRKPGQERLFIVPEGLSNPDRPGCVIGDQLPMATLNSLYESLQT
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatgtgtatgaaggagaggctgcctacactgccttgcgggtggcactcggcgat
ccatccacggcggcgtccttcaagtgcgacgaggtaccgttcgaacggctgcgtcgcgcc
attgcggacgagaggctgagcccgctggatcgggcaattcgtctgcgccacgctctgcgt
catgccgatctgacgctatcggccggtggcgtacggcgcgcattgccacacccgaccggc
gtgctgtggccgaccgcacagcaatgtgcaacctgcggcttggtgctccgtgccggcaac
ctcgttgaagcagagccttggcgaccggactggctcgagcacggtgctgcggccgtcgat
acgcaagcgatgcagcagcaggtgcggccttggatccagcggctgcccgaagcggatcgc
tggattaaggctcggttcggctatcagcattatcgcgggcccggacaggcgctcgcggtg
cgctcggcgctgcacatgctgcccggccaagccttacttgccatattgcccacgggtgag
ggtaagagcttggtgttccaggccttggctgcggcccatccgggccaagtggtggcggtg
gtcgtgcccacggtcgcgctggcccaagaccatgacaacagtgtcagcaaatacggcgaa
cagtttggcactcacacgcacgcctatgttggcgggcaagatcagcaaaacgccgagatc
atcgatcggatcggtaccggcgaacagggtttggtgtttgccgcgccagaagctttcgtc
ggtcgtctgcaaccggcgctgctgcgtgcggctaaagcgggcaagttagcggcggtagtg
atcgacgaggcccatctcatcgacgcctggggaaccgatttcaggaatgaattccagctg
ttggccgccctggtcgccgagctgcaaacacaagcgccagttcgccgccagtcgcgcctg
ctttgcctgtcggcgaccgtcacgcaactcgcctacgataccttgcagcgcctgttttct
ccccatgcgccgctcgcgctggtggcgggtgcgcgcctgcgaccggagcccgacacttgg
gtcgcgcgcatggcgcccgacgaggcaacgcgcaaggcacgggtcctggaagcagtgatg
catttgccgcgtccggccatcctttatgtgaccaaggtggaagatgtgcaagactggtat
caatttctgttcgatcacggtttacgtcgcatgcgtaccgtgcatggcaaatcgtcgcct
tccgatcgtagcgctactgtgaaagcatggagtacaggcgaactcgaccttgtcattggt
acatccgcattcggccttggtatcgattatccgcatgtgcggacggtgatccacgcctgt
attccggagagtctcgaccgttattatcaggaggtcgggcgctcaggacgggataaccac
gctagtattgtgctgctggtaccagcgccggtagacggtggcgtagcgcacactgtctct
gcccaaaaaattatttcggtcgagaagggactggcacggtggagttccatgttttcctat
tgcgagagtgatacgagcgcagacgcagagcgtcgcttcagtatcgacacctcggtgcct
cctccctacgacatggacatgatgggcgaacgcaacgaagattggaatggccgagtgcta
tcgctaatggcacgcgccgggctgatagcgtttgcgggactgcgttttaacccggcgaag
atgcggaccaatgttgtcgtcgacatcctagatgatgggcaccacgatcccgtgatttgg
caaacgcatgtcgagccggtaaggcaaacattactgcggacgtcgagagaacgtttacgc
ggcatgctggcgctgacgcgggaagtgcagtgcccgagccagcgactcataaacttgtac
gccttgaacaatggcgtcgaggtgctgccagtggtgcccgcttgcggcggttgtgcggca
tgccgcgccgccggcgagccgggatggtttgctgactggcccaatccaccggccgcgccc
tggcccgccggaggtttatcgccgcgcctcctgcgtcagatcgtgcacggccgtggcctt
atcgagcgggataccgaatcattcgacaaatcgtcccagcggcgttttatccgtgacgtc
atgaacggcttgtgggacgacggcgtgcgcaagtgcctcgtcatcggtagtacgccgacg
gccgtcgacgaagcgcttactgagcggccatggtgcacagcgcaggccaacgacgcaaag
ctactcagcagtaatgggctgccccctggacccgtcgtggtgtgggttggcgcaggaatg
agcattcctgaacataatttttccccacgcaaacctggccaggaacggctattcattgtc
ccggaaggcttgtccaatccggaccgtccgggatgcgtgattggcgatcaactcccgatg
gctaccttaaattccctttacgaatccctacagacatga
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