Janthinobacterium lividum: G3257_10015
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Entry
G3257_10015 CDS
T06723
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jlv
Janthinobacterium lividum
Pathway
jlv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jlv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3257_10015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jlv03019
]
G3257_10015
Enzymes [BR:
jlv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3257_10015
Messenger RNA biogenesis [BR:
jlv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3257_10015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKY02555
LinkDB
All DBs
Position
complement(2237042..2238412)
Genome browser
AA seq
456 aa
AA seq
DB search
MSFSSLGLSDAIVRAVTEHGYTVPTPIQSQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVL
HRLSTDANGASITSNTSTRPIRALILAPTRELAAQVEESVRAYSKYTKLNSTVIFGGVGI
NPQIKQLKHGVDILVATPGRLLDHMGQGTVDLSKVEILILDEADRMLDMGFIRDIKKVLA
VLPPKRQNLLFSATFSEEIKALADGLLNKPAMIEVARRNSTVEVIKQKIHPVDRDKKHPM
LSYLIKSNNWTQVLVFTRTKHGANKLVEQLGADGIGALAIHGNKSQSARTRALSEFKDGT
LQVLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGAKGEAVSLVCVDEHE
MLKDIEKLIKQTLPREVIPGFEPDLNARAQPVQLRSGTGGHRNNSRAPAGAVVRVKTGGS
GAKPRSAGPSGGGGGGNRSGNAPRSAANHRSGGRGR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcctccctcggattgtccgacgctatcgtacgtgccgttaccgaacacggc
tacaccgtgccgaccccgatccagtcgcaggcgattcccgccgtgctggctggcggcgac
ttgctggccggtgcacaaaccggtaccggcaagacggccggctttaccctgcccgtgctg
caccgcctgtcgacggacgccaatggcgcgtccatcaccagcaacacctcgacgcgcccg
atccgcgccctgatcctggccccgacgcgcgaactcgccgcgcaggtcgaggaaagcgtg
cgcgcctacagcaagtacacaaaattgaactcgaccgtgatcttcggcggcgtcggcatc
aacccgcaaatcaagcagctcaagcatggcgtcgacatcctcgtcgccacgccgggccgt
ttgctggaccatatgggccagggcaccgtcgacctgtcgaaagtggaaatcctgatcctg
gacgaagccgaccgcatgctggacatgggtttcatccgcgacatcaagaaagtgctggcc
gtgctgccgccaaaacgccagaacctgctgttctcggccacgttctcggaagagatcaag
gccctggccgacggcttgctgaacaagccagccatgatcgaagtggcgcgccgcaattcg
accgtggaagtgatcaagcaaaagatccatccggtcgaccgcgacaagaagcacccgatg
ctgtcctacctgatcaagtcgaacaactggacgcaagtgctggtatttacgcgcaccaag
catggcgccaataaactggtcgagcaactgggcgcggacggcatcggcgccctggccatc
cacggcaacaagagccagtcggcacgcacgcgcgcgctgtccgagttcaaggatggcacc
ttgcaagtgctggtcgccaccgacatcgccgcacgcggcatcgatatcgaccagctgccg
cacgtcgtcaactacgacttgccgaacattccggaagactatgtgcaccgtatcggccgc
acgggccgtgccggcgccaagggcgaagccgtgtcgctggtctgcgtagatgagcacgaa
atgttgaaagacatcgaaaagctgatcaagcaaaccctgccgcgcgaagtcatcccgggc
ttcgagcccgacctgaacgcccgcgcccagcctgtgcaattgcgcagcggcaccggcggc
caccgcaacaacagccgcgcgccagctggcgccgtcgtgcgcgtgaaaaccggcggcagc
ggcgccaagccacgcagcgccggcccatcgggcggcggtggcggcggcaaccgttcgggc
aatgcgccgcgttcggcagcgaaccaccgttccggcggccgcggccgctaa
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