Janthinobacterium lividum: G3257_26605
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Entry
G3257_26605 CDS
T06723
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
jlv
Janthinobacterium lividum
Pathway
jlv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jlv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3257_26605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jlv03021
]
G3257_26605
03019 Messenger RNA biogenesis [BR:
jlv03019
]
G3257_26605
Transcription machinery [BR:
jlv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
G3257_26605
Messenger RNA biogenesis [BR:
jlv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
G3257_26605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
QKY05470
LinkDB
All DBs
Position
5972659..5973921
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AA seq
420 aa
AA seq
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MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GESPEMSKHRILFENLTPLHPNEPLRLEREMNGQENITGRIIDLIAPIGKGQRGLLVASP
KSGKSVILQHIAHAITANHPDITLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPNELQKIWILRKLLYSMDEIEAMEFILDKMKATKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaaggccctacacgtatccgccctgcttgagatggcgatcggt
cttgacattgacaacgcagcccgcttgcgcaaacaggagctgatgttcgctatcctgaaa
aaacgcgccaagtccggcgaacagatttttggcgatggcgccctggaagtgctgcctgac
ggcttcggcttcctgcgctcgcccgacgccagctacatggcgtccaccgacgacatttac
atctccccttcgcaaatccgccgcttcaatctgcacaccggcgattcgatcgaaggcgag
gtacggaccccgaaagatggcgaacgctatttcgcattggtcaaagtcgacaaggtcaac
ggcgaatcgccggagatgtcgaaacaccgcatcctgtttgaaaacctgacgccgctgcac
ccgaacgagccgctgcgcctggaacgtgaaatgaatggccaggaaaacatcaccggccgc
atcatcgacctgatcgccccgatcggcaaaggccagcgcggcttgctggtggcatcgccg
aaatccggtaaatccgtgatcctgcagcacatcgcccatgcgatcacggcaaatcatccg
gacatcaccctgatcgtgctgctgatcgacgaacgcccggaagaagttaccgaaatgcaa
cgttcggtccgcggcgaagtcgtcgcctcgaccttcgacgagccagccacgcgccacgtg
caagtggccgagatggtgctggaaaaagccaagcgcctggtcgaaatgaagaaagacgtg
gtcatcctgctcgactcgatcacccgtctggcgcgtgcctacaacaccgtcatccctgcc
tcgggcaaggtgctgaccggtggtgtcgacgcgaacgcgctgcaacgtccaaaacgcttc
ttcggcgccgcgcgcaatatcgaagaaggcggctcgctgaccatcatcgccacggcgctg
atcgaaacgggctcgcgcatggatgacgtgatctttgaagaattcaagggtacgggcaac
atggaagtgcatctggaacgccgtctggccgaaaaacgcgtctacccggccatcaacctg
aacaaatcgggtacccgccgcgaagaactgctgatcaagccgaacgagctgcaaaaaatc
tggattttgcgtaagttgctgtactcgatggacgagatcgaggcgatggagttcattctc
gacaagatgaaagccacgaagaacaacgccgagttcttcgacatgatgcgtagaggcggc
taa
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