Janthinobacterium lividum: G3257_27040
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Entry
G3257_27040 CDS
T06723
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
jlv
Janthinobacterium lividum
Pathway
jlv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jlv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3257_27040 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jlv03019
]
G3257_27040 (pcnB)
Enzymes [BR:
jlv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
G3257_27040 (pcnB)
Messenger RNA biogenesis [BR:
jlv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G3257_27040 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
Motif
Other DBs
NCBI-ProteinID:
QKY05546
LinkDB
All DBs
Position
6067509..6068879
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AA seq
456 aa
AA seq
DB search
MIKKFIRKILGVKKEAARDTTAPIVLGPAQHGIDPKLVSSNAIRVTSSLQEAGFEAFVVG
GAVRDLLLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGA
GADSAPKDEHGRVLRDNTFGLQHEDALRRDFTINAMYYNPATQEVLDYHGGVEDIRAKTL
RMIGKPEERYREDPVRMLRVVRFAAKLKFTIEPHTAAPIPIMAPLINNVPAPRVFDEMLK
LLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGAKFVTLALDATDARIAAGKTVSPG
FLFASLLWHQVLEKWTAYRAAGESTIPALHLAADDVLDSQTEKLALQRKIGSDMRDIWSM
QPRFERRVGKAPYKLLEHLRFRAGYDFLLLRCASGEIDMDIGEWWTAFYEGDEETREALL
VSANAAPGAVKKKRPPRRSTRSKTGGGSATGGSSDE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaaattcatccgcaagatcctcggcgttaaaaaagaggcagcgcgcgacacc
acggcacccatcgtgctcggtcctgcgcaacacggaatcgacccgaaactggtgtcgtcg
aatgccatccgcgtcaccagcagcctgcaggaagcgggcttcgaggcttttgtcgtcggc
ggcgccgtgcgcgacctgctgctgggcgtgaagccgaaagacttcgacatcgccaccaac
gccacgccggaacaggtcaagcgcttgttccgccgcgccttcatcatcggcaagcgcttc
cagatcgtgcacgtcatgttcggccaggatttgctggaagtgacgaccttccgcggcgcc
ggcgccgactccgcgcccaaggatgaacatggccgcgtcctgcgcgacaataccttcggc
ttgcagcacgaagatgcgctgcgccgcgacttcaccatcaacgccatgtactacaacccg
gccacgcaggaagtgctggactaccacggcggcgtggaagacatccgcgccaagaccttg
cgcatgatcggcaagccggaagagcgctaccgcgaagatcccgtgcgcatgctgcgcgtg
gtgcgctttgccgccaagctgaaattcaccatcgagccgcacacggccgcgccgatcccc
atcatggcgccactgatcaacaacgtgcccgcgccgcgcgtgttcgatgaaatgctgaaa
ctgctgatgagcggccacgcgctggcctgcctgcagcagctgcgcaaggaaggcttgcat
cacggcctgctgccgctgctcgacgtggtgctggaacagccgctgggcgcaaaattcgtc
accctggcgctggacgccacggacgcccgcatcgccgccggcaagaccgtctcgccgggc
ttcctgttcgcttcgctgctgtggcaccaggtactggaaaaatggacggcctaccgcgcc
gccggcgaatcgaccattcccgcgctgcacctggcggccgacgacgtgctcgattcgcag
acagaaaagctggccttgcagcgcaagatcggttccgacatgcgcgacatctggtcgatg
cagccgcgcttcgagcgccgggtcggcaaggcgccgtacaagttgctcgagcacctgcgc
ttccgtgccggctacgacttcctgctgctgcgctgcgcctctggcgagatcgacatggac
atcggcgaatggtggacggccttttatgaaggcgacgaggaaacgcgcgaagcgctgctc
gtcagcgccaatgccgcaccgggcgccgtcaagaaaaagcgcccgccacgccgcagcacg
cgcagcaagaccggcggcggctcggccaccggcggcagcagcgacgaatga
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