Jannaschia ovalis: P8627_02605
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Entry
P8627_02605 CDS
T10628
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jov Jannaschia ovalis
Pathway
jov03020
RNA polymerase
Brite
Enzymes [BR:
jov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P8627_02605 (rpoC)
Transcription machinery [BR:
jov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P8627_02605 (rpoC)
DNA repair and recombination proteins [BR:
jov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P8627_02605 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WGH79173
LinkDB
All DBs
Position
complement(514385..518617)
Genome browser
AA seq
1410 aa
AA seq
DB search
MNQELTNNPFNPIAPQKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLAYGQLMSEEEFMDAQDAYGADAFQ
ANIGAEAIREMLAAIDLDAEAAQLREDLKEATGELKPKKIIKRLKIVENFIESGNRPEWM
ILTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVSMERQGMKGEGMIFSSVDEVVHAL
EAGEVHLHARIKARVTQIDEMGEEVGRVYDTTPGRVRLGALLPLNAKAPFDLVNRLLRKK
EVQQTIDTVYRYCGQKESVIFCDQIMTLGFREAFKAGISFGKDDMVIPEEKWGIVESTRE
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMSNISVSATDESGAEAEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRVDDCGTEKAITAQAAVNDGEIVATLAERVLGRV
AAEDAVKPGTDEVIVAAGELIDERRADLIDQAQIQSMRIRSPLTCEAEEGVCATCYGRDL
ARGTKVNLGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFMEASVEGTVEYRNAS
TLMNEAGGVVVMGRNMSLAIIDENGEERSTHKLGYGTTLFVKEGQKVARGDKLFEWDPYT
LPIIAEADGKAKFVDLYAGISVRDETDDATGMTQKIVSDWRSAPKGSDLKPEVLVVGEDG
EPVRNEAGNPVTYPMSVDAILSVEDGQMLKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEADGTVKFGKDYKNKRRITVVPSDDSLEPIDYMVPKGKHIPVQEGDYVQ
RGDYIMDGNPAPHDILRILGIEALADYLIDEVQDVYRLQGVRINDKHIEVIVRQMLQKWE
ILDSGGTTLLKGEHVDKAELMEANEKAEARGDRPARAEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQKMRAIAQSRDNVVIEAARA
EAEKAAALAAPSEEEVFKDTPAAEEEPVED
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaacaacccgttcaacccgatcgcgccgcagaaggtcttcgac
gagatcaaggtctcgctggcctcgcccgagcggatcctctcgtggtcctatggcgagatc
aagaagcccgagaccatcaactaccgtacgttcaagcccgagcgcgacggcctgttctgc
gcgcgcatcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgtcgaggtcaccctgcagaaggtccgc
cgcgagcgcatgggccatatcgagctggcctcgcccgtcgcccatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgatctcgagcggatc
ctctatttcgagaattacgttgtgatcgagccgggcctcacggacctcgcctacgggcag
ctgatgtccgaggaggagttcatggacgcgcaggacgcctacggcgccgacgcgttccag
gccaatatcggggccgaggccatccgcgagatgctggccgcgatcgacctcgatgccgag
gccgcgcagctgcgcgaggacctcaaggaggccacgggcgagctgaagcccaagaagatc
atcaagcgcctgaagatcgtcgagaacttcatcgagtcgggcaaccggcccgaatggatg
atcctgacggtgatcccggtcatcccgcccgagctgcgcccgctggtcccgctcgacggc
ggccgcttcgccacgtctgacctgaacgatctctaccgccgcgtcatcaaccgcaacaac
cgcctcaagcggctcatcgagctgcgcgcgcccgacatcatcgtgcgcaacgagaagcgg
atgctgcaggaatccgtcgacgcgctcttcgacaacggccgtcgcggccgcgtcatcacc
ggcgccaacaagcgcccgctgaagtcgctgtcggacatgctcaagggcaagcagggccgg
ttccgccagaacctgctcggcaagcgcgtggacttctcgggccgctcggtcatcgtgacc
gggccggagctgaagctgcatcaatgcggcctgcccaagaagatggcgctcgaactcttc
aagccgttcatctactcgcggctcgaagccaagggcctgtcgtccaccgtcaagcaggcg
aagaagctggtcgagaaggagcgtcccgaggtctgggacatcctcgacgaggtcatccgc
gagcacccggtccttctgaaccgcgcgcccacgctgcaccgtctcggcatccaggccttc
gagcccgtgttgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttc
aacgccgatttcgacggcgaccagatggccgtgcacgtgccgctctcgctggaagcccag
cttgaggcacgcgtcctgatgatgtcgacgaacaacgtgctgtcgcccgcaaacggcgcg
ccgatcatcgtgccgtcgcaggacatgatcctcggcctctactacgtctcgatggagcgt
cagggcatgaagggcgaggggatgatcttctcctcggtcgacgaggtcgtgcacgcgctc
gaggccggcgaggtgcatctgcacgcccggatcaaggcgcgcgtcacccagatcgacgag
atgggcgaggaagtgggccgcgtctacgacacgacccccggccgcgtgcgcctcggcgcg
ctcctgccgctcaatgccaaggcgcccttcgacctggtcaaccgcctgcttcgcaagaag
gaggtccagcagaccatcgacaccgtctaccgctattgcggccagaaggagtcggtcatc
ttctgcgaccagatcatgacgctgggcttccgcgaggccttcaaggccggcatctccttc
ggcaaggacgacatggtcatccccgaggagaagtggggcatcgtcgaatccacccgcgag
caggtgaaggatttcgagcagcaatacatggacggcctgatcacccagggcgagaagtac
aacaaggtcgtcgacgcctggtccaagtgcaacgacaaggtgaccgaggcgatgatgtcc
aacatctccgtctccgccaccgacgagtcgggcgccgaggccgagccgaactcggtctac
atgatggcccattccggcgcgcgcggctcggtcacgcagatgaagcagctgggcgggatg
cgcggcctgatggccaagccgaacggcgacatcatcgagacgccgatcatctcgaacttc
aaggaaggcctcaccgtgctggagtacttcaactccacccacggcgcccgcaagggcctg
tcggacaccgcgctcaagaccgcgaactcgggctacctgacccgtcgactcgtcgacgtg
gcgcaggactgcatcgtccgggtcgacgattgcgggaccgagaaggcgatcaccgcgcag
gcggccgtcaatgacggcgagatcgtcgccaccctggccgagcgcgtgctgggccgggtc
gcggcggaggatgccgtcaagccgggcaccgacgaggtaatcgtcgcggccggcgagctg
atcgacgaacgccgcgccgacctgatcgaccaggcgcagatccagtcgatgcgcatccgc
tcgcccttgacctgcgaggccgaggagggcgtctgcgcgacctgctacgggcgcgacctg
gcgcgcggcaccaaggtgaacctcggcgaggccgtgggcatcatcgcggcgcagtcgatc
ggcgagccgggcacccagctgacgatgcggaccttccacatcggcggcgtggcccagggc
ggccagcagagcttcatggaggcctcggtcgagggcaccgtggagtatcgcaacgccagc
acgctgatgaacgaggccggcggcgtcgtcgtgatggggcgcaacatgtcgctcgccatc
atcgacgagaacggcgaggagcggtcgacccacaagctgggctacggcaccacgctcttc
gtcaaggaaggccagaaggtcgcccgcggcgacaagctgttcgagtgggatccctacacc
ctgccgatcatcgccgaagccgacggcaaggcgaaattcgtcgatctctacgcgggcatc
tccgtgcgcgacgagaccgacgacgcgaccggcatgacccagaagatcgtctcggactgg
cggtcggcgccgaagggctcggatctcaagcccgaggtgctggtcgtcggcgaggatggc
gagccggtgcgcaacgaggccggcaacccggtgacctacccgatgtcggtggacgcgatc
ctctcggtcgaggatggccagatgctgaaggccggcgacgtggtcgcacggatcccgcgc
gagggcgccaagaccaaggacatcacgggcggcctgccgcgcgtggcggagctgttcgag
gcgcgccgtcccaaggatcacgcgatcatcgcggaggccgacggcacggtgaagttcggc
aaggactacaagaacaagcgccggatcaccgtggtgccctccgacgacagcctcgagccg
atcgactacatggtgcccaagggcaagcacatccccgtgcaggagggcgattacgtccag
cgcggcgactacatcatggatggcaaccccgccccgcacgacatcctgcggatcctgggc
atcgaggcgctggccgactacctgatcgacgaggtgcaggatgtgtaccgcctgcagggc
gtgcgcatcaacgacaagcacatcgaggtcatcgtccgccagatgctccagaagtgggag
atcctcgacagcggcggcaccacgctgctgaagggcgagcatgtcgacaaggccgagctg
atggaggccaacgagaaggccgaagcgcgcggcgaccgtcccgcccgggccgagccgatc
ctgctcgggatcaccaaggcgtcgttgcagacccgcagcttcatctcggcggcctccttc
caggagacgacccgcgtgctcaccgaggcgtccgtccagggcaagcgcgacaagctcgtc
ggcctcaaggagaacgtcatcgtgggccgcctgatcccggcgggcacgggcggcgcgacg
cagaagatgcgcgccatcgcccagagccgcgacaatgtcgtgatcgaagccgcgcgcgcc
gaggccgagaaggccgcggccctcgccgccccgtcggaggaggaggtgttcaaggacacc
cccgccgccgaggaggaacccgtcgaggattga
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