Jannaschia ovalis: P8627_03245
Help
Entry
P8627_03245 CDS
T10628
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
jov Jannaschia ovalis
Pathway
jov02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jov00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
P8627_03245 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jov03021
]
P8627_03245 (rpoD)
Transcription machinery [BR:
jov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
P8627_03245 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
FTCD_C
DUF1451
Motif
Other DBs
NCBI-ProteinID:
WGH79295
UniProt:
A0ABY8LGN9
LinkDB
All DBs
Position
639073..641067
Genome browser
AA seq
664 aa
AA seq
DB search
MAKDTDDQKQDNEGDISLDMSQAAVKRMITEARARGYITYDQLNQVLPPEQVSSEQIEDV
MSMLSEMGINIVEAEEAEEDEEDDQKSAGSTAVVDASKKGGDVATTDGSSEKLDRTDDPV
RMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILL
RDVIDLETTFGNQMEEEGDTPVVGTAAPANDNSKTDSAKTELDADGNPIADDDDEDEDEG
ANMSLAAMEAALKPRVLETLDRIADDYTRLAEMQDLRISATLNEDDSFSATEEDEYQELR
SEIVELVNGLHLHNNRIEALIDQLYGINRRIMSIDSGMVKLADQARINRREFIEEYRGHE
LDPGWVDRMTEKSGRGWQALFERSREKVEELRSDMAQVGQYVGVDINEFRRIVNQVQKGE
KEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST
YATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQM
PLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLA
SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRS
FLDQ
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagacaccgacgaccagaagcaggacaacgagggcgacatctcgctcgacatg
agccaggccgccgtcaagaggatgatcaccgaggcgcgcgcccggggctacatcacctac
gaccagctcaaccaggtcctgccgccggaacaggtgtcgtccgagcagatcgaagacgtc
atgtcgatgctctcggagatgggcatcaacatcgtcgaggccgaggaggccgaagaagac
gaggaagacgatcagaaatccgccggctcgaccgccgtcgtcgacgcgtcgaagaagggt
ggcgacgtcgccacgaccgatggcagctccgagaagttggaccggacggacgatccggtc
cggatgtatttgcgcgagatgggctcggtcgagcttctgtcccgcgagggcgagatcgcc
atcgccaagcgcatcgaggccggccgcaacacgatgatcctggggctgtgcgaaagcccc
ctcaccttccaggccatcacgatctggcgcgacgagcttctgtccgaggacatcctactg
cgcgacgtgatcgacctcgagacgactttcggcaaccagatggaggaggagggcgacacg
cccgtcgtcggcaccgccgcgccggccaacgacaactccaagaccgatagcgccaagacc
gagctcgacgccgacggcaacccgatcgccgacgacgatgacgaggacgaggacgagggc
gccaacatgtcgctcgccgcgatggaggccgcgctcaagccccgcgtgctcgagacgctg
gaccgcatcgccgacgactacacccgcctcgccgagatgcaggacctgcggatctcggcc
acgctgaacgaggatgacagcttctccgccacggaggaggacgagtaccaggagctgcgc
tccgagatcgtcgaactggtcaacggcctgcatctgcacaacaaccgcatcgaggcgctg
atcgaccagctctacggcatcaaccgccggatcatgtcgatcgactcgggcatggtgaag
ctggccgaccaggcccgcatcaaccgccgcgagttcatcgaggaatatcgcggccacgag
ctcgatcccggctgggtcgatcgcatgaccgagaagtcgggccgcggctggcaggcgctg
ttcgagcgctcacgcgagaaggtcgaggagctgcgctcggacatggcgcaggtcggccag
tatgtcggcgtcgatatcaacgaattccgccgcatcgtgaatcaggtccagaagggcgag
aaagaagcccgccaggccaagaaggagatggtcgaggccaacctgcgcctcgtgatctcg
atcgcgaagaaatacaccaatcgcgggctgcaattcctggacctgatccaggagggcaat
atcggcctgatgaaggccgtcgacaaattcgagtatcgccgcggctataagttctcgacc
tatgcgacctggtggatccggcaggcgatcacccggtccatcgccgaccaggcgcgcacg
atccgcatcccggtccacatgatcgagacgatcaacaaactggtccgcaccggccgccag
atgctgcacgagatcggccgcgaaccgacgcccgaggagctggccgccaagctgcagatg
ccgctggagaaggtccgcaaggtgatgaagatcgccaaggagccgatcagcctcgagacg
cccatcggcgacgaggaggacagccagctcggcgatttcatcgaggacaagaacgccgtc
ctgccgctcgactcggccattcaggagaacctgaaggagacgacgacccgggtcctcgcc
tcgctgacgccgcgcgaggagcgggtgctgcgcatgcgcttcggcatcgggatgaacacc
gaccacacgctcgaagaggtcggccagcaattctcggtcacccgcgagcgcatccgccag
atcgaggccaaggcgctgcgcaagctcaagcacccctcgcgcagccgcaagctgcggagc
ttcctcgaccagtga
DBGET
integrated database retrieval system
